Raphanus sativus (radish): 108862973
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Entry
108862973 CDS
T06014
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03030
DNA replication
rsz03410
Base excision repair
rsz03420
Nucleotide excision repair
rsz03430
Mismatch repair
rsz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108862973
03410 Base excision repair
108862973
03420 Nucleotide excision repair
108862973
03430 Mismatch repair
108862973
03440 Homologous recombination
108862973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsz03032
]
108862973
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108862973
Enzymes [BR:
rsz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
108862973
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
108862973
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
108862973
MMR (mismatch excision repair)
DNA polymerase delta complex
108862973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
REV3_N
divDNApol
Motif
Other DBs
NCBI-GeneID:
108862973
NCBI-ProteinID:
XP_018492756
UniProt:
A0A6J0P7W4
LinkDB
All DBs
Position
5:complement(33263331..33270610)
Genome browser
AA seq
1090 aa
AA seq
DB search
MNRAGNSKKRPPPSTTLPAGKHRATGATPSPSPIVGTLEDEFVDEDVFADEVDEESLILR
DMEEREALSARSSTWARPPLSPAYLANSQSIIFQQLEIDYVIKEVHKELLPGSSGQAAVI
RIFGVTREGHSVCCFVHGFEPYFYIACPPGMGPDDISRFHQSLEGRMRESNKNANVPKFV
RCIEMVQKKSIMYYQQQKSQTFLKITVALPTMVASCRGILDRGIQIDGLGMKSFQTYESN
IVFALRFMVDRDIVGGNWIEVPAGKYKKDARTLSYCQLEFHCLYSDLISHAPEGEYSKMA
PFRVLSFDIECAGRKGHFPEAKHDPVIQIANLVTLQGEDQPFIRNVMTLNSCAPIVGVDV
MSFETERKVLLAWKDFVRDVDPDIIIGYNICKFDLPYLIERAAALGIEEFPLLGRVKNSR
VRMRDSTFSSRQQGTRESKETTIEGRFQFDLFQAIHRDHKLSSYSLNSVSAHFLSEQKED
VHHSIITDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMCIYNYVEMARVTGVPISFLLA
RGQSIKVLSQLLRKAKQKNMVLPNAKQGSEQGTFEGATVLEARTGFYEKPIATLDFASLY
PSIMMAYNLCYCTLVTPEDVRKLNLPPEHINKTPSGETFVKQSLQKGILPEILEELISAR
KRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQM
IEQTKKFVEDKFTTLGGYEYNAEVIYGDTDSVMVQFGVPDVEAAMTLGKEAADYISGTFI
KPIKLEFEKVYFPYLLINKKRYAGLVWTNPQKFDKMDTKGIETVRRDNCLLVKNLVTESL
HKILIDRDVPGAAEYVKNTISDLLMNRIDLSLLVITKGLTKTGDDYEVKSAHGELAERMR
KRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLQNNIPIDPNYYLENQISKPLLR
IFEPVLKNASSELLRGDHTRSISISTPSNSGIMRFAKKQLSCVGCKVPISTGTLCARCKG
REAELYCKNVSQVSDLEELFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRMKAQKDMAT
AKQQLDRWSF
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgagcgggaaactccaaaaaacgaccgcctccgtcgaccaccttaccggcgggg
aaacaccgcgccaccggtgctactccctcaccatccccaatcgtcggaaccctagaagac
gaattcgtcgacgaggatgtgttcgcggacgaagtagacgaggaatccctaattctccgc
gatatggaggagcgtgaagccctctccgcacgctcatccacctgggctcgacctcctctc
tcacccgcgtatctcgcgaattcgcagagtatcatttttcagcaattggagattgattat
gtaatcaaggaggttcataaggagcttttacctggttcctctgggcaagctgcagttatc
aggatcttcggtgtaaccagagaaggtcatagtgtgtgttgctttgttcatgggtttgag
ccttacttttacattgcttgccctcctggaatgggtcctgacgatatctctcgtttccat
cagagtcttgagggaaggatgagggagtccaataagaatgccaacgttccgaagttcgtt
cgttgtatagaaatggtgcaaaagaaaagcattatgtattaccaacagcaaaagtcccaa
acttttctcaagattactgttgcgttgcccactatggtggctagctgtcgcggtattctt
gatagaggcatacagattgatggattgggtatgaagagcttccaaacatacgagagcaat
attgtttttgctctccgtttcatggttgaccgtgatattgtgggaggaaattggatcgaa
gtgcctgctgggaaatataagaaggatgcaaggactttgtcatactgccaattggagttc
cattgcctgtactcagatttgatcagtcatgctccagaaggtgaatactcaaaaatggct
ccattccgtgtgctgagtttcgatattgagtgtgcgggtcgtaaaggacactttccagag
gctaagcatgatcctgtgatccagatagccaaccttgtaactcttcagggagaggatcaa
ccatttatacgcaatgtcatgacacttaactcatgtgctccaatcgttggcgtagatgtt
atgtcttttgaaacagaaagaaaggtcttactagcttggaaggattttgttcgtgacgtt
gatcctgatatcatcattggctataacatctgcaaattcgatttaccttatctgattgag
agagctgcagcactgggaatcgaggaatttcctcttcttggtcgtgtaaagaacagtagg
gtccggatgagggattcaacgttttcatcaagacaacaaggaacaagggaaagtaaagag
accacaattgaaggacgatttcagtttgacctttttcaggctatacacagagaccacaaa
ttaagttcctattcgctgaattctgtctcagctcacttcctatccgagcagaaagaggat
gtccaccattctataataaccgatctacagaatgggaatgcggaaaccaggaggcgtctt
gctgtttattgtttgaaggatgcatatctccctcagcggcttctcgacaaactgatgtgt
atatataattatgtcgaaatggctcgtgtgactggggttcctatttcttttcttcttgct
agaggacagagtatcaaggttctatctcagcttcttaggaaagctaaacagaagaacatg
gttcttccgaatgctaaacaagggtctgaacaaggaacttttgaaggcgcaactgttcta
gaagcaagaacaggtttctatgagaagccaattgcaactctggattttgcttcattgtac
ccgtctattatgatggcatataatttgtgctactgcaccttggtgacacctgaagatgtg
cgcaaactgaatcttccacctgagcatatcaataaaactccatcaggggaaacatttgtt
aagcaaagtttacaaaagggtatacttccagagattcttgaagagctcattagtgcccgt
aaaagagctaaagcagatttaaaggaggctaaggatccgcttgagaaggctgttttagat
ggtagacagttggcattaaagatcagtgcaaattctgtatacgggtttacaggagccact
attgggcagttaccttgcttagaaatatcatcaagcgtgactagctatggtcgtcagatg
attgaacaaacaaagaaattcgtggaagataaattcacaaccttgggagggtatgaatac
aatgctgaggtcatttatggagacacggattcagtcatggtgcaatttggcgtaccggat
gtagaagctgcgatgaccttggggaaggaagctgcagattatattagcggaacatttatc
aaacctatcaaactggagtttgagaaggtttatttcccatatttgctgatcaacaagaag
aggtatgctggtttggtgtggactaatcctcagaagtttgacaaaatggacaccaaagga
atcgagacagtacgaagggataattgtttactggttaagaacctcgtcactgagagtctt
cacaaaatactaatcgatagagatgttccaggcgcagcggagtatgttaagaatacaatt
tcggatcttttgatgaaccgtattgacctatcgcttttggtgattactaagggtctaact
aaaacaggagatgattatgaagttaaatcagctcatggtgagctggctgaacgcatgcgt
aagagagacgctgcaacagcgccaaatgttggcgaccgggtaccatatgttattattaaa
gcagctaaaggtgccaaggcttatgaacggtcagaagatccgatttacgtgcttcagaat
aatattcctatagacccgaattactacctagagaatcagattagcaagccgcttcttagg
atttttgagccggtcttaaaaaatgctagtagtgaacttctccgtggagatcacacgagg
tcaatatcaattagtactccttcaaacagcggcataatgagatttgcgaagaaacaactg
agctgtgttggctgcaaagtgccgatcagcactggaacattgtgtgcacgttgcaaggga
agagaagccgagttatactgcaaaaacgtgtctcaggtgtcagacctagaggagctcttt
gggaggctgtggacacagtgtcaggaatgccaaggctctcttcaccaagatgtcttgtgc
accagtcgagattgtccaatattttaccggagaatgaaagcacaaaaagacatggccaca
gccaagcaacaactcgaccgttggagcttctaa
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integrated database retrieval system
