Raphanus sativus (radish): 108862982
Help
Entry
108862982 CDS
T06014
Name
(RefSeq) coatomer subunit beta'-3 isoform X1
KO
K17302
coatomer subunit beta'
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108862982
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rsz04147
]
108862982
Membrane trafficking [BR:
rsz04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
108862982
Exosome [BR:
rsz04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
108862982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_Nup120_160
WD_LRWD1
WD40_like
TPR_GEMI5
Beta-prop_IFT122_1st
Clathrin
Motif
Other DBs
NCBI-GeneID:
108862982
NCBI-ProteinID:
XP_018492767
UniProt:
A0A6J0P705
LinkDB
All DBs
Position
5:36550651..36557591
Genome browser
AA seq
923 aa
AA seq
DB search
MPLRLDIKKKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTITKSFEVTELPV
RSAKFIPRKQWVVAAADDMHIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRSIKIWNLGSPDPNFT
LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE
LPIILTGSEDGTVRIWHATTYRLENTLNYALERVWAIGYIKSSRRVVIGYDEGTIMVKIG
REVPVASMDSSGKIIWAKHNEIQTANIKSIGSSYEVTDGERLPLAVKDLGTCDLYPQSLK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSGLEFVWSSEGECAVRESSSKIKIFNKNFQ
ERKSIRPTFSAEKIFGGSLLAMCSNDFICFYDWAECRLIQRIDVTVKNLYWAESGDLVAI
ASDTSFYILKYNRDLVSSYFATGRPTDEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNS
SSKLNYCVGGEVTTMYHLDRPMYLLGYIANQGRVYLVDKEFNVIGYTLLLSLIEYKTLVM
RGDLDKANEILPTIPKEQHNNIAHFLESRGMIEDALEIATDPDYRFELAIQLGRLQIAKE
IAEEVQSESKWKQLGDLAMSSGKLQLAEDCMKYATDLSGLLLLYSSLGDAEGMSKLASLA
KEQGKNNVAFLCLFMLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSK
VNSKAAESLADPEEYPNLFEDWQVALSVEANAVEARGGYAAAENYATYADQPFTTLVEAF
RNLQVEAEEPIENGDMDDEVEEENGDAENEGGEEEEHEGEEEEVNQEEEGVVDEDSTDGS
AVLVNRSEGEEEWGTNNKGNQSA
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcagactcgacatcaagaaaaaatttgctcaacgatcagagagagttaaatct
gtggatctgcatcctactgaaccatggattctagcaagtttgtattctggaaccctgtgt
atttggaactaccagacacagacgataactaaatccttcgaggttaccgaattgccagtt
aggtcggccaagtttattccacgcaagcaatgggttgtggcagcagcggatgatatgcac
atccgtgtctacaattacaacacaatggacaaggttaaagtatttgaggctcattccgat
tacattaggtgtgtcgctgtccatcccacccttccgtacgtgctgtcatcttctgatgat
atgctcattaagctttgggactgggaaaatggttgggcctgtactcagatatttgaggga
cattctcattatgtgatgcaagtggtgtttaatccaaaagacaccaacacctttgccagt
gcatcgcttgaccgttccataaagatatggaatcttggttccccagacccaaattttaca
ctggatgctcatcagaaaggagtcaactgcgtagattatttcacagggggtgataagccc
tatttaattactggctctgatgatcatactgctaaggtatgggactatcaaactaagagt
tgtgtccagacgctcgaagggcatacccacaatgtatctgcagtatgtttccatccggag
cttccaataatactcacaggttctgaggatggcactgttcgcatttggcatgccacgact
tacaggctagagaacacattgaattatgctctcgagagagtctgggccattggttacata
aaaagttcgcgcagggttgtgattggatatgatgaaggaaccatcatggttaaaattgga
cgagaagttcctgtcgctagcatggacagtagcggaaaaattatatgggctaagcataat
gaaatccaaactgcaaacatcaaaagtattggttccagttacgaggttactgatggagaa
agactccccttggctgttaaagatctggggacctgtgatctgtatccacaaagcttgaag
cacaaccctaacgggaggtttgtcgtagtctgcggtgatggagagtacataatctacaca
gctttggcttggagaaatagatctttcggttctggactggaatttgtttggtcatccgag
ggggaatgtgcagttcgagagagctcgtcaaagataaagatattcaataaaaatttccag
gaaaggaagagtattcggcccactttctcagctgagaagatttttggaggatccttgtta
gcaatgtgttcaaatgatttcatctgcttttatgattgggctgaatgtaggctgattcag
cgaattgatgtcacagtaaagaatctttattgggcagaaagtggtgatttagtagccatt
gctagtgatacatcattctacatcctgaagtacaatcgtgacttggtttcctcctatttt
gctactggaagaccaactgatgaagaaggtgttgaggatgcttttgaggttctccatgag
aatgatgaacgtgttaggacaggtatatgggtcggggactgcttcatttacaacaactct
tcttcgaagcttaactattgtgttggaggcgaggtaaccacaatgtatcatttggaccgt
ccaatgtatttgttaggctatattgccaatcaaggccgggtctacttggtagacaaagaa
ttcaatgtcataggatataccctgctgcttagcctgattgaatacaagactcttgtgatg
cggggtgatttggacaaagccaatgaaattttacctacaatccctaaagagcagcataac
aatattgctcacttcttggagtctcggggaatgattgaagatgctttagaaattgcgaca
gatcctgactacagatttgagcttgccatacaattgggtagacttcaaattgccaaggaa
atcgctgaagaagtgcagagtgagtctaaatggaagcagttaggtgacttagccatgtct
tctggcaagctgcaattggccgaggattgcatgaagtacgctacggatttgagtggtttg
ctactactatattcttctttgggagatgctgaagggatgtcaaagcttgcatctcttgct
aaggagcagggaaagaacaatgtcgcctttctttgtttattcatgctgggtagattggaa
gattgtctgcagttattggtggagagtaaccggataccagaagctgctctgatggcgcgt
tcttatctcccaagcaaagtttcagagatagtagctctttggaggaaagatctaagcaag
gttaattcgaaagcagcagaatctttggctgatcctgaagagtacccaaatctttttgag
gattggcaagttgctctttctgttgaagcgaatgctgtagaggcgaggggaggttatgct
gctgcagaaaattatgcaacatacgctgatcaacctttcactactctcgtggaagccttc
agaaacctgcaagttgaagcagaggaaccaattgaaaatggagacatggatgacgaggta
gaagaagaaaatggtgatgcagagaatgaaggaggtgaagaggaagagcatgaaggagaa
gaagaagaagtgaatcaagaagaagagggagttgttgatgaagactcgacagatggtagt
gctgtacttgttaatagaagtgagggtgaggaagagtggggtacgaataacaaaggaaac
caatcagcctaa
DBGET
integrated database retrieval system
