Raphanus sativus (radish): 108863109
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Entry
108863109 CDS
T06014
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108863109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108863109
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108863109
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
108863109
NCBI-ProteinID:
XP_018492925
UniProt:
A0A6J0P8G1
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Position
5:complement(28253417..28255960)
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AA seq
596 aa
AA seq
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MYKRVALSSFPEEVLEHVFSFIDLDKDRNSVSLVCKSWYEIERWCRRRVFVGNCYAVSPA
AVVTRFPRARSVEIKGKPHFADFNLVPEGWGGCVYPWIEAMSESYTWLEEIRLKRMVVSD
ECLELIAKSFKDFKVLVLSSCDGFSTDGLAAIASTCRNLKELDLRESDVDDVSGHWLSHF
PDTYTSLVSLNISCLVSEVSFSALERLVCRSPNLKSLKLNRAVPLEKLATLLQRAPQLEE
FGTGVYSAEVRPDVLSALSAAIAGCKNLKWLSGFWDALPAYLPAVYSVCSGLTTLNLSYA
TVQSYDLVKLLSQCPKLQRLWVLDYIEDAGLEMLALTCKDLRELRVFPSEPFVMEPNVEL
TEQGLVSVSAGCPKLESVLYFCRQMTNAALVTIARNRPNMTRFRLCIIEPKAPDHLTLEP
LDVGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG
CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID
ERGPPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQQHSTTRFSRQIITTNGL
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgtataagcgagtggccttgtcgtcgtttccagaagaagtcctggagcacgtcttctcc
ttcatagacctcgacaaggaccgcaactcggtctccctcgtgtgcaagtcgtggtacgag
atcgagcggtggtgcaggaggagagtcttcgtagggaactgctacgcggtgagccccgcg
gcggttgtaactcggttcccgagagcgagatcggtggagatcaaggggaaaccgcacttc
gcggacttcaacctggtgccggaggggtggggagggtgcgtgtacccgtggatagaggcg
atgtcggagtcttacacgtggctggaggagataaggctgaagaggatggtggtgagcgac
gagtgcttggagctcatcgcgaagtcgtttaaggatttcaaggttcttgttctctcttcc
tgcgacggcttctccaccgatggcctcgctgctatcgcttccacttgcaggaatctgaaa
gagcttgatttgcgtgagagtgatgtagacgatgttagcggacactggcttagccatttc
cctgacacatacacctctttggtctcactcaatatctcttgtctagtctctgaggtcagt
ttctcggctctggaacggctggtatgcaggtcacccaacctcaagtctctcaagcttaac
cgagctgttcctcttgagaagttggcgactttgcttcaaagagcgcctcagctggaggaa
tttggcaccggtgtgtacagtgctgaagtgcgtcctgatgtgctctctgctttatctgca
gccatcgctggttgcaagaatttgaagtggttatctgggttttgggatgctcttcctgcc
taccttcctgctgtttattctgtttgcagtggtcttacgactttgaacctgagttatgca
actgttcagagctatgatcttgtcaagcttcttagtcaatgtcctaaattgcagcgcctc
tgggtgctggactacatcgaggatgctggtcttgaaatgcttgctctaacctgcaaggac
cttcgagagctgcgagtgtttccgtctgagccttttgtgatggagccaaacgttgaattg
acagaacaagggcttgtctccgtctccgctggctgtccaaaactggagtcggttctctac
ttctgccgtcaaatgaccaatgctgcgctcgtaaccattgctaggaaccgtcccaacatg
acccgcttccgtttgtgcatcattgagccgaaagcccctgaccatctgactctagagcca
cttgatgtggggtttggtgcaatagtagagcactgcaaagatctccggcggctctccctg
tcggggctgttgaccgacaaggtcttcgaatacattggcacgtatgcaaagaagatggaa
atgctctcggtagcgtttgcaggagacagtgacttggggatgcatcatgttttatcaggg
tgcgatagcttgaggaagctagagataagggactgcccctttggagacaaggcgcttttg
gcaaatgcttcgaagctggagacaatgcgatctctttggatgtcttcctgttccgtgagt
tttggagcctgcaagttgttaggacagaagatgccaaagctcaatgtggaagtgatcgat
gaacggggtccgcctgactcgaggcccgagagctgccctgttgaaagagtgttcatatac
cgaacagtggctggtcctcggtttgacatgcctggtttcgtctggaacatggaccaacaa
cactcaaccacgaggttttctaggcaaatcatcactactaacgggttatag
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