Raphanus sativus (radish): 108863198
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Entry
108863198 CDS
T06014
Name
(RefSeq) ubiquitin C-terminal hydrolase 13 isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108863198
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rsz01002
]
108863198
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108863198
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108863198
Peptidases and inhibitors [BR:
rsz01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108863198
Ubiquitin system [BR:
rsz04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108863198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH_2
MATH
UCH_1
RA
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
108863198
NCBI-ProteinID:
XP_018493037
UniProt:
A0A6J0P7R8
LinkDB
All DBs
Position
5:complement(4467857..4477458)
Genome browser
AA seq
1116 aa
AA seq
DB search
MTTVTPPPPDQQEDEEMLVPHSDVVEGPQPMEVAQPEAAAAATAVESPPVEEPPTMKFTW
TIPGFTRLNTRKHYSDVFVVGGHKWRVLIFPKGNNVDHLSMYLDVADAASLPYGWSRFSQ
FGLTLVNQINSSYSIRKETQHQFNSRESDWGFTSFMPLSELYDPTRGYLVNDTILIEAEV
AVRKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTETDAPT
ASIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKG
TVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYDSFDKYVEVERL
EGDNKYHAEGHDLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLELDL
DRDNRKYLSPDADKSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKE
DVKRALEEQYGGEEELPQNNPGLNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA
EHLRVRLKKEQEEKEDKRKYKAQAHLFTTIKVSRDEDITEQIGKNIYFDLVDHEKVKSFR
IQKQTPFQLFKEEVAKEFGIPVQLQRFWIWAKRQNHTYRLNRPLLSHEELQTVGLLREAC
NKANNAELKLFLEIVRGPDERPIPPPDKSSEDILLFFKLYDPENAVLRYVGRLMVKNSTK
PMDIVGQLNQMAGFPPDEEIELFEEIKFEPNVMCEHLDKKTSFRLSQIEDGDIICFQKPL
SIQENGCPYPDVPSFLEYVQNREVVRFRTLEKPKEDEFTMELSKRHTYDVVVERLAEKLG
LDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLAHYNQTSDILYYEVLDIPLPELQG
LKTLKVAFHHATKDEVVIHNIRLPKQSTVGDVIKELKTKVELSHPDAELRLLEVFFHKIY
KIFTSTERIENINDQYWTLRAEEIPEEEKNIGPGDRLVHVYHFTKEQNQSQVQNFGEPFF
QVIHEGETLEEIKPRIQKKLHVPDEDFAKWKFASFSMGRPDYLQDTDIVYDRFQRRDVYG
AWEQYLGLEHIDNAPKRAYAANQNRHAYEKPVKIYN
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgactacggtgactccaccgccgcctgatcagcaagaggacgaggaaatgctcgttccg
cattctgatgtggtcgagggaccccagcctatggaagttgctcaacctgaggctgctgcc
gctgctaccgctgtggagagtcctcctgtggaggagcctcccactatgaagttcacgtgg
actatcccaggtttcactaggctgaacaccaggaagcattactctgatgtattcgttgtt
ggaggccataaatggagagtattgatttttcccaaaggaaacaatgttgaccatttgtcc
atgtacttggatgttgctgacgctgcgagtttgccgtatgggtggagcaggttttcacag
ttcggcctgactttagtgaatcaaatcaacagcagttattccatcagaaaagagacccaa
catcaattcaattcaagagaaagcgactgggggtttacatcattcatgcctctcagcgag
ctttacgatcctactcgtggatatttagtgaatgatactattctaattgaagctgaagtt
gctgtgcggaaggttcttgattactggtcatatgactcaaaaaaagagactggttttgtt
ggactaaaaaaccaaggtgctacctgctacatgaattctctcctgcagacgttataccac
ataccttactttagaaaggctgtttaccacatgccaacaactgagactgatgcacctacg
gcgagtatcccattggcgctccagagtttgttttataagcttcagtataatgataccagt
gtagctacaaaagagctaaccaagtcgtttggttgggatacatatgattcattcatgcaa
catgatgttcaagaactcaaccgagttctctgtgaaaagcttgaggacaaaatgaaggga
actgttgtggagggaactatacagaagttattcgagggtcaccacatgaattacattgag
tgcatcaatgtagattacaaatctacacggaaagaatcattctatgacctccagcttgat
gttaaaggctgcaaagatgtatatgattcttttgacaagtatgttgaagttgaacgcctt
gaaggtgacaacaaataccatgcagaaggacatgatttacaggatgcaaaaaaaggtgtt
ttgtttatagactttccacccgtacttcaacttcagctcaagaggtttgaatatgatttt
atgcgagacacaatggtgaagataaatgatcgatatgagtttcctcttgaactggatctc
gacagagataatagaaagtatttatcccctgatgctgacaagagtgtccgtaatctatac
acactccacagtgtcttagttcatagtggcggagtgcatggagggcactattatgctttt
attaggccgactctctcagaccagtggtataaatttgatgatgaacgggtgactaaggaa
gatgtgaaaagggctctggaagagcaatatggtggtgaggaagagttaccacagaataat
cctggtttaaataacccaccttttaagttcacaaaatactcgaacgcatacatgcttgtt
tatatccgggaaagtgacaaggataaaataatctgcaacgttgatgaaaaggacattgca
gaacatttacgggtgagactaaaaaaagaacaagaagaaaaggaagataaaagaaaatat
aaggctcaagctcatcttttcacgacaatcaaggtctcaagagatgaagacatcactgag
caaattggaaagaatatatattttgatcttgttgatcatgaaaaagttaagagtttccgt
attcagaaacagactccctttcaactatttaaggaggaggtggccaaagaatttggtatc
ccggttcagctccagcggttctggatttgggcaaagcggcagaaccatacttatcggctc
aatcgtcccctattatctcacgaagaattacagacggttggacttttaagagaggcatgt
aacaaggcaaacaatgctgaactaaagctgtttctggaaatagtgcgcggaccggacgaa
cgtcctattcctcccccagacaagtcatctgaagatattctccttttctttaagctctat
gaccctgagaatgcagttctaagatatgtcggcaggctcatggtgaaaaactccactaag
ccgatggatatagtagggcaattgaatcaaatggctggctttcctcctgatgaggaaata
gaactttttgaggagataaagtttgaacccaatgtcatgtgcgaacatctggataagaag
acttctttcagactatctcaaattgaagatggagatatcatttgctttcagaaacccctt
tctatccaggagaatggatgtccttacccggatgtaccatcatttttggagtatgtacag
aatcgagaggtggtgcgctttcgtactctggaaaaaccaaaagaagatgagtttactatg
gagttgtcaaagcggcacacatatgatgttgttgttgaaagattagctgagaagcttggc
cttgatgatccatcgaaaattaggcttacttctcacaattgctactcccagcaacccaag
ccccagcctatcaaataccgtggagtagaccatctttcagatatgttagctcactataat
cagacgtctgacattttgtattatgaagttctggacattcctcttccagaattgcaaggt
cttaagactctaaaggtagctttccatcatgctacaaaggacgaggtggtaatccacaat
atcaggcttcctaaacagagtactgtgggagatgttattaaggagcttaaaacaaaggtg
gagttatcgcatcctgatgcagaactgaggttgctagaggtgtttttccacaagatttac
aagatctttacatctacggaaagaattgagaatatcaatgaccagtactggactttacga
gcagaggagatacctgaggaagagaagaatattggtcccggtgatcgattagtccatgtg
taccattttactaaagaacaaaaccaatcgcaagtacaaaatttcggggagccgttcttt
caggtaatccacgaaggtgaaactttagaagaaatcaagccccgtatccaaaagaaactc
catgtacctgatgaggacttcgccaagtggaagtttgcttctttctcaatgggacgtccc
gactacttgcaggacacagatatcgtttatgatcgctttcagagaagagatgtatatggt
gcgtgggagcagtatcttgggttggagcacattgataatgctcctaaaagggcttatgct
gcaaatcagaatcgacacgcttatgagaagccggtgaaaatatacaattag
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integrated database retrieval system
