Raphanus sativus (radish): 108863219
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Entry
108863219 CDS
T06014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108863219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108863219
03041 Spliceosome [BR:
rsz03041
]
108863219
03009 Ribosome biogenesis [BR:
rsz03009
]
108863219
03016 Transfer RNA biogenesis [BR:
rsz03016
]
108863219
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108863219
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108863219
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108863219
Complex C
U4/U6.U5 tri-SnRNP related factors
108863219
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-60S particles
Helicases
108863219
Transfer RNA biogenesis [BR:
rsz03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108863219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
DUF5659
Motif
Other DBs
NCBI-GeneID:
108863219
NCBI-ProteinID:
XP_018493072
UniProt:
A0A6J0P7V4
LinkDB
All DBs
Position
5:3357746..3362673
Genome browser
AA seq
991 aa
AA seq
DB search
MSTVMEEPETLGKRKASESSKLSDETTTTKRRNSQKRACVHEVAVPNGYTPTKEEAVHGT
LDNPLYNGDMAKTYPFTLDPFQSISVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDK
QRVIYTSPLKALSNQKFRELQHEFKDVGLMTGDVTISPNASCLVMTTEILRAMLYRGSEV
LKEVAWVVFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQ
PCHVVYTDFRPTPLQHYAFPMGGSGLYLVVDENEQFREANFIKMHDTFPKPKSSDGKKSA
NGKSGGRGGKGGGGGGGGDSDVYKIVKMIMERKFQPIIIFSFSRRECENHALSMSKLDFN
TEEEKGTVEEVFNNAMLCLNEEDRSLSAIEMMLPLLQRGIAVHHSGLLPVLKELVELLFQ
EGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDER
GICIIMIDEQMEMPVLKDMVLGKPAPLLSTFRLSYYTILNLLSRAEGQFTAEHVIKHSFH
QFQYEKALPDIENKVTKLEEEAAILDASGKAEVAEYHKLKLDIAPLEKKLMSEIIRPERV
LCFLDTGRLVKIREGGTDWGWGVVVNVVKKASVGTSSSQGGGYIVDTLLHCSTGVSENGA
KPKPCPPRPGEKGEMHVVPVQLPLITALSRLRISVPSDLRPLEARQSILLAVQELSSRFP
LGFPKLHPVKDMNIQDTEIVELVSQIEEAEQKLLSHPMHKSEDDQQMKSFERKAEVNYEI
QQFKSKMRDSQLQKFRDELRNRSRVLKKLGHIDADGVVLVKGRAACLIDTGDELLVTELM
FNGTFNDLDHHQIAALASCFIPVDKSNEKVELRNELNKPLQQLQDSARKIAEIQHECKLE
IDVEEYVESTNRPSLMDVIYCWSKGSTFAEIMNMTDIFEGSIIRSARRLDEFLNQLRLAA
EAVGENNLASKFAAASESLRRGIMFANSLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgtaatggaagaaccggagactctcggaaagaggaaagcatccgaaagctca
aagctttccgatgagaccaccacgacgaagcgtagaaacagccagaaacgagcttgcgta
cacgaagtcgccgtacccaacggctacacaccgacgaaagaggaggccgtccacggaact
ctcgacaatcctctgtacaacggagacatggccaaaacctaccctttcacactcgaccct
ttccagagcatctccgtggcgtgccttgagaggaaagagtcgatcttggtctcggcccac
acctccgcaggcaaaacagccgtcgcggagtacgccatcgcgatggccttcagggacaag
cagagggtgatctacacctccccgttgaaagccctgagcaaccagaagttcagagagctc
cagcacgagtttaaagacgttggtctgatgaccggtgacgtcacgatctcccccaacgcg
agttgcttggtgatgacgacggagattctgagagcgatgctttacagaggctctgaggtg
ttgaaggaggtggcttgggttgtttttgatgagatacattacatgaaggatagggagaga
ggggttgtttgggaggagagtattatcttcctgccgcctgctattaagatggttttcctc
tcggcgacgatgtcgaatgctaccgagtttgcggagtggatttgctatctgcataagcag
ccgtgtcacgttgtgtacacggattttaggcccacgccgctgcagcattatgcgtttcct
atgggtgggagtgggctttaccttgtcgttgatgagaatgagcagttccgtgaggctaat
ttcattaagatgcatgatactttcccaaagccaaaatcttctgatgggaaaaagagtgca
aatggcaaatcaggtggtaggggcggcaaaggtggtggtggtggcggcggtggtgattct
gatgtttacaaaattgtaaagatgatcatggaaagaaagtttcaaccaataatcatcttc
agcttcagtagaagggaatgtgagaatcatgcgttgtcaatgtcaaaactcgattttaat
acggaggaagagaaggggactgtggaagaggtattcaacaatgctatgctgtgcctgaat
gaggaggatagatctctgtccgccatagagatgatgttgccactgctccaacgtggtatc
gccgtccaccattctggtcttcttcctgtcctcaaggaattagtggaacttctctttcag
gaagggcttgtaaaggcgcttttcgccacagaaacttttgctatgggtttgaacatgcct
gcaaaaactgtagtgtttactgctgttaagaagtgggatggtgacagccatcgtttcatt
gggtctggtgaatacatccagatgagcggcagggctggacgtcgtggaaaggatgaacgt
ggtatctgtattattatgattgatgaacagatggaaatgcctgtactcaaggacatggtg
ctgggcaaaccagcccctttgcttagtacttttaggttgagttactacacaattttgaat
ctattgagtcgtgcggaaggacagtttacagctgagcatgttataaaacactcgttccac
caattccagtatgaaaaggctttaccggatattgagaacaaggtgaccaaacttgaagag
gaagctgccatccttgatgcttctggaaaggcagaggttgctgagtaccataagctaaaa
cttgacatagctccgctggaaaagaaacttatgtcagaaataataaggcctgagagggtg
ctttgttttcttgatactggtcggctggttaagatacgagaaggtgggacagattggggc
tggggagttgtagttaatgttgttaaaaaagcttccgttggaacctcctcttcacaaggt
ggcggatatatagtggatactctacttcattgctccactggtgttagcgagaatggtgca
aagccaaagccgtgtcctccccgtcctggggaaaagggtgagatgcatgtggttcctgtt
cagctaccattaattactgctttgagtagactaaggatatcggttccgtctgatcttcgg
ccactagaagcaagacaaagcatactacttgcagtacaggagttgtccagtcgcttccct
ttagggttcccaaaactccatccagtcaaggacatgaatattcaagatacagagatagta
gagctggtcagccaaattgaagaagctgagcagaagttactttctcatccgatgcacaag
tctgaagatgatcagcaaatgaagagtttcgagaggaaagcggaggtgaattatgaaatt
cagcagttcaagtcgaaaatgcgtgattcccagcttcaaaagtttagagatgagcttagg
aaccgttctcgggtattaaagaaacttggacacattgatgctgatggtgtcgtccttgta
aagggacgagctgcctgcttgatagacactggggatgaattgcttgtcactgaactgatg
tttaatggcacttttaatgatctggatcatcaccaaatagcagcccttgcaagctgtttc
atacctgtagataaatcaaatgaaaaggtagagctaagaaatgaactcaataaaccgttg
cagcagctccaagatagtgcacggaaaattgcagagatacaacatgaatgcaaactggaa
attgacgtcgaagagtacgtagaatccaccaacaggccttccctaatggacgttatctac
tgttggtcaaagggttcgacatttgcagagataatgaatatgactgatatattcgagggt
agtatcattaggagcgccagaaggctcgacgagtttctgaaccagcttcgacttgcagcg
gaagcagttggagagaacaatttggcgagcaagtttgcagctgctagcgagagcttgcga
agaggcatcatgtttgcgaattcactttatttataa
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