KEGG   Raphanus sativus (radish): 108863375
Entry
108863375         CDS       T06014                                 
Name
(RefSeq) uncharacterized protein LOC108863375 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    108863375
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rsz03400]
    108863375
DNA repair and recombination proteins [BR:rsz03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     108863375
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 WD40_Prp19 Beta-prop_IFT122_1st Ubl_WDR48-Bun107 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd WDR55 Beta-prop_TEP1_2nd EIF3I WD40_Gbeta Beta-prop_WDR36-Utp21_1st Beta-prop_EML_2 Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 NBCH_WD40 Beta-prop_SCAP ASA1 DSE1_N WD40_MABP1-WDR62_2nd Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_RIG_2nd TRM82_WD Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_NOL10_N PAC11 WD40_RFWD3 Beta-prop_Aladin RAWUL DNAI3_WD Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 108863375
NCBI-ProteinID: XP_018493275
UniProt: A0A6J0P9B8
LinkDB
Position
5:39209606..39214636
AA seq 758 aa
MHRVASSGSNGGSVRTRKEKKLTYVLNDANDSKQHCAGVNCLDVLKSSVSSDQSYLFTGS
RDGTLKRWAFDEDSSFCSATFESHVDWVNDAALAGESTLVSCSSDTTVKTWDSLSDGVCT
RTLRQHSDYVTCLAVAAKNSNVVASGGLGGEVFIWDIEAALSPVTKPNDAMEDSSSNGAN
GVGNSQPVASLRNVGSSNNISVQSSPSDGYTPTIAKGHKESVYALAMNDAGTMLVSGGTE
KVLRVWDPRTGSKTMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYA
VHTDSVWALACTPSFTHVYSGGRDQSLYLTDLATRESVLMCNKEHPIQQLALQDDSIWIA
TIDSSVERWPAEVQSPQKVFQRGGSFLAGNLSFNRARVSLEGLNPPPAYKEPLMTIPGSQ
PIVQHEILNNKRQILTKDAGDSVKLWDITKGVVVEDYGKISFEEKKEELSEMVSIPSWFT
VDTRLGCLSLHLETPQCFSAEMYSADLKISGRPEDDKINLGRETLKGLLGHWLAKKKHKP
KPQVLASGDILSVKDTKKNLIASKSEDNSAANDPVYPPFEFPSVSPPSIITEGSQGGPWR
KKITEFTGTEDEKDFPLWSLDAILNNRLPPRENTKLSFFLHPCEGSNVQVVTLGKLSAPR
ILRVHKVTNYVVEKMVLDSPLDSLAVDGASVSGGPQQLFAGNGLLTSGSKPWQKLRPSIE
ILCNNQVLSPEWSLATVRTFIWKKPEDLILNYRVAIAR
NT seq 2277 nt   +upstreamnt  +downstreamnt
atgcaccgggttgcaagttctgggagtaatggcggttctgtccgcactcgcaaagagaaa
aagcttacctatgtcttaaatgatgctaacgactcaaagcagcactgtgctggcgtaaat
tgcttggatgtgttgaagtcgtctgtttccagtgatcagagctacctcttcactgggagt
cgtgatggtacactcaagagatgggcttttgatgaggattcgtccttttgctcagctact
tttgagtctcatgttgattgggtgaatgacgctgctttggctggtgaaagcactcttgtt
tcttgttcttcagacactaccgtcaagacatgggacagcttatcagatggagtctgtacg
aggactctccgtcagcactcggactatgttacttgtctggcagttgcggcaaaaaatagc
aatgttgttgcatctggtggccttggcggggaggttttcatatgggatatcgaagctgct
ttatcaccagttacgaaacctaatgatgcaatggaagatagttcttcaaacggtgcaaat
ggcgttgggaactctcagcccgttgcaagtttaagaaacgttggttcgagcaacaatatc
tctgtgcagtcatcaccatccgatgggtacacaccaacaattgccaaaggccataaggag
tccgtctatgctttggcgatgaatgatgcagggacgatgctcgtctctggtggaacagag
aaggttttgcgtgtctgggaccctagaactggttcaaaaactatgaagctgagggggcac
acagataatgtcagagtgctgcttctagactcaactggcaggttttgcttgtctgggtcc
tctgattctatgataagactttgggatctaggtcagcagcgatgtcttcatacctatgcg
gtgcatacagattctgtttgggcgcttgcatgcaccccatcatttactcatgtttatagc
ggtggaagagaccaatctttatacttgacagacttggcaacaagagaaagcgttttgatg
tgtaataaagaacatccgattcagcaattagcgttgcaagatgatagtatatggattgca
acaatagactcctctgtagagagatggcccgccgaagtacagagtcctcaaaaggtcttt
caacgaggtggctcgttcttggctgggaatttgtctttcaatagggcgagagtgtccttg
gaaggactaaatccgccccctgcctacaaggagcctttaatgactattccaggaagccag
ccgattgtgcagcatgaaattttgaataataaaaggcaaatcttaaccaaggacgcaggt
gactcagtgaaactatgggatataactaagggtgttgtggtagaggactatgggaagata
tcgtttgaagagaagaaagaagaactttctgaaatggtaagcattccatcgtggtttact
gtggatacacgacttggatgcttgtccttacatttggagactccacaatgcttctctgct
gagatgtattcagcagacctcaaaatttctgggcgacctgaagatgataagattaatcta
ggtcgtgaaacactgaaaggcttgctgggtcattggctggcaaagaagaagcacaaacca
aaaccccaagttcttgcctctggagatattctatccgtaaaagataccaaaaagaatctg
attgcttccaaaagtgaagacaacagtgctgcaaatgatccggtgtatcctccatttgag
tttccttctgtctcccctccgtccatcatcactgagggttctcaaggaggtccatggaga
aagaagataactgagtttactggaactgaagatgagaaggacttccccttgtggtccctg
gacgctatcttgaacaatcgtcttccacctagagaaaatacaaaattaagcttctttctg
catccatgtgaaggctcaaatgtgcaggtggtcacactagggaaacttagtgcaccccgg
atcttaagagttcacaaggttaccaattacgttgtggaaaagatggtccttgacagtccg
ttggatagtttagctgttgatggagcaagtgtttcaggaggaccacagcaactgtttgca
ggaaatggattgctaacgtctggatcaaagccttggcagaaactcagaccttccattgag
atcttatgtaataaccaggtcttatctccagagtggagtttggcaactgtgcggacgttt
atatggaagaaacctgaggatctaatcctcaactacagggtggctatagctagataa

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