Raphanus sativus (radish): 130494388
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Entry
130494388 CDS
T06014
Name
(RefSeq) endoribonuclease Dicer homolog 2-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rsz03036
]
130494388
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130494388
microRNA pathway
RISC loading complex
130494388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
PAZ
ResIII
Helicase_C
dsrm
SNF2-rel_dom
SWI2_SNF2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130494388
NCBI-ProteinID:
XP_056853487
UniProt:
A0A9W3CPE2
LinkDB
All DBs
Position
Unknown
AA seq
1396 aa
AA seq
DB search
MMMMMCTDDMETDIADQVSASSPLPFARSYQVEALEKAMKQNTIVYLETGSGKTLIAIML
LRSYAYLFRKPSPCFTVFLVPQVVLVTQQAEALKRHTDLKVGMYWGSMGVDYWDASTWKQ
EVDKYEVLVMTPAILLNALRHSFLTLNMIKVLIFDECHHARGNHAYACILKEFYHKELNS
ATSFVPRIFGMTASPVKTKGENLDSYWKKISELETLMNSKVYTCESESVLARFVPFSTPS
FKYYQHMGIPSSKRAGLVAELEKLATEHLLALETLDLKSSTVNSIKKRLSKICSSITYCL
DELGIFMAQKAAQLFSTSQNDFVLWGQLEKFSETSIKKFCSTASQTILAYIPDGPTWSVA
NIKRNVEAGLITSKIVCLVESLLDYSSLEKIRCIIFVQRVIAAMVLESFLNEILPTYNSW
KTEYVAGNNSGLQSQSRKKQFETVEDFRKGLVNIIVSTSILEEGLDVQSCNLVVGFDPAS
NICSFIQSQGRARMPNSDYLMMVKSGDMPTQSRLMKYISGGKRMREDSLSHSHVPCQPLP
NDSSEDFFRVNSTGAIVTLRSSVSLIYFYCSRLPSDEYFKPAPRFDIDEDRGICTLYLPK
SCQVKEVRVQANKSVLKQSACLEACIQLHQAGALTNHLVPDMVLKETVQQKLGKIHYDPE
QPSYFPPELVSQFSALPQTTYHFYSIRMKSEFPRSLHFNDILLGTRVELEADIGNTCFRL
EDHLGSIAVRLSYVGSFDLTQDEVLLCRRFQITLFRVLLDHSVENLMAALDGLHLRDGVA
LDYLLVPSTHEQKASLIDWEVIRSVNLTSHKPWERHADCSAKDASCILHTKEGLFCTCVL
QNALVYTPHNGYVYCTRGILSNLNANSILTRRKSGDESYMEYYEKRHEIRLNFVDEPFLN
GRHIFTLHNHLHMTRKKKEKEHDREFVELPPELCHVILSPISVDMIYSYKFMPSVMQRIE
SLLIAFNLKKNIPKVYIPTIKVLEAITTKKCQDQFHLESLETLGDSFLKYAVCQHLFQSY
HSHHEGLLSTIKDGMISNVTLCKFGCNQKLQGFIRNECFEPKGWMVPGQSSAAYALVNDY
LSESGNMYIAKRRNLKRKTVADVVESLIGAYLSEGGELAALAFMNWVGIKVDFTTTVIHR
EPSIQAEKLVNVSYMESLLNYKFKDKSLLVEALTHGSYMIPEIPRCYQRLEFLGDSVLDY
LITKHLYGEYPNLSPGLLTDMRSASVNNECYAQVAVKSNLHKHVLHASHDLHKHISRTVG
EFEHLSSVQSSFGWESEIAFPKVLGDVIESLAGAIHVDSGYNKEVVFASVKPLLGCMITP
KTVKLHPVRELTEYCQKAQFELSKAKGYEKGEAYFKVEVKAKEMSFAHTSKASDKKMAKK
LAYKEVLNLLKKSLDS
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatgatgtgtactgatgatatggagactgatatcgccgatcaagtctctgct
tcttctcctctaccattcgcgagaagttatcaagtggaggcgcttgagaaagcaatgaag
cagaacacgattgtttacttggagactggttctggcaagactcttattgctattatgctt
ctccgtagctatgcttaccttttccgcaagccttctccttgcttcaccgtcttcttggtt
cctcaagttgttcttgtcactcaacaagctgaagcgctgaagaggcatacggatctgaaa
gtgggcatgtattggggatccatgggggttgactattgggatgcttctacatggaaacaa
gaagtcgataaatatgaggttcttgtgatgacacctgccattttgctcaatgcattaaga
catagttttctgacgttgaacatgatcaaggttctaatatttgatgaatgtcatcatgct
cggggtaatcacgcgtacgcttgtatcttgaaggagttctatcataaggagttaaattct
gcaacttcattcgttcctcgaatatttgggatgactgcatcccctgtgaaaacaaagggt
gaaaacttggatagctactggaaaaagatcagtgaactcgaaactctaatgaattcaaag
gtgtacacatgtgaaagtgagtcggtgctggctcgttttgtccccttttctactccgagt
ttcaagtactaccagcacatgggaataccaagctctaaacgcgcaggcttggtagcggaa
cttgaaaagctagccacagagcatctcttagcccttgaaacactggatctcaagtcatcc
actgttaattctataaagaagagactgtcaaagatatgttcatctataacttattgtttg
gatgaacttggaatttttatggcgcagaaggctgctcagttattctcaaccagtcagaac
gactttgtcttgtggggtcaactagagaagtttagcgaaacctctataaaaaaattctgt
agtactgcttcacagaccattttagcttacatacctgatggtcctacctggagtgttgct
aacataaaaagaaatgtggaggcaggtctcataacgtcgaaaatagtctgccttgttgaa
tctcttcttgattatagctccttggagaaaatacggtgcatcatatttgtgcaaagggtg
atagcagctatggttttggaatcctttttgaatgaaattcttccaacctataatagctgg
aaaactgagtacgttgcaggaaataactctggcctgcaaagtcaatcccggaagaagcag
tttgaaactgtggaggacttccgaaaaggcttggtgaacatcatcgtctcaacatctatt
ctagaggaaggtctagatgttcaaagttgcaatctggttgtcggatttgaccctgcatcc
aacatttgcagtttcatacaatctcaagggcgtgctagaatgcctaactcagattatctg
atgatggtgaaaagcggagatatgcccacacaatctcggttgatgaaatatatttctggt
gggaaaagaatgcgtgaagattctttgagtcattctcatgttccctgtcaacctcttcca
aatgattcatccgaggatttcttccgcgtcaacagcacaggagcaattgttactcttaga
tcaagcgtcagcttaatatatttctactgctcaaggcttccttcagatgaatacttcaaa
ccagctcctagatttgatatagacgaggatcgggggatttgcaccctttaccttcccaag
agctgtcaagtcaaagaagttagagtccaagcaaataaaagtgtgttaaaacaatctgca
tgtcttgaagcttgcattcagctgcaccaagctggtgctctcactaatcatcttgtccct
gacatggttttgaaggaaactgtccaacaaaaactagggaaaatccattacgaccctgaa
cagccaagttactttcctccagagctagtctcccagttttcagcactgccgcagacaaca
taccacttctactcaataaggatgaagtcagaatttccaagaagtcttcattttaacgat
attttactgggcacgagggttgagctcgaagctgacattgggaacacatgcttccgctta
gaagatcatcttggctcaatagctgtgagactgagttatgtgggatcgtttgaccttaca
caagatgaggtcctcttgtgtagaaggtttcagataactcttttcagagttcttttggat
catagtgtggaaaatttgatggcggcgttggatgggttgcatctcagagacggtgtagca
cttgattatctactagttccatccactcatgagcaaaaagcatctctcattgattgggag
gtgataagatccgtgaacttaacgagtcataaaccttgggaaaggcatgcggattgttct
gccaaggatgcttcttgcattctacacacaaaagaggggttgttttgcacctgtgtctta
cagaatgctttggtttacacaccacataatggatacgtctactgcaccagaggtattctc
agcaatttaaacgcaaattcgatattgacgaggagaaagtctggcgatgagtcctacatg
gagtactatgagaaaaggcatgagattcgtttaaattttgtggatgaaccttttttgaac
gggagacacattttcacgctgcataatcaccttcacatgaccaggaagaaaaaggagaaa
gagcatgacagagagttcgttgaactacctcctgagctatgtcatgtcatattgtctcca
atatcagtggatatgatctattcctataaattcatgccatctgttatgcaacggattgaa
tctttgcttatagcattcaaccttaaaaagaacatcccaaaagtctatattccaaccatc
aaggttctggaagctatcacaacgaagaagtgccaagatcagttccacttggaatcacta
gaaacacttggtgattcttttctgaaatatgctgtttgtcagcatctattccaaagttat
catagtcatcacgagggtcttctcagcacgataaaagatggaatgatttcgaatgtcacg
ctctgcaaatttggatgtaaccagaaacttcagggatttattcgaaatgagtgttttgaa
cctaaagggtggatggttcctggtcaatcatctgcagcttatgctcttgttaatgattat
ctatccgaatctggaaacatgtacattgctaagaggaggaatttgaaacgcaagactgtg
gctgatgtcgtagaatcacttattggtgcgtatcttagcgaaggaggtgaactagcagcg
ttagcgttcatgaactgggtcggtataaaagtcgatttcacaactacggtgatccacaga
gagccatcaatacaagctgagaagcttgtgaatgtaagctacatggagtctcttttgaac
tataaattcaaggataagtctcttctagtcgaggcattgactcatggctcgtacatgatt
cctgaaattccaagatgctatcagcggttggagtttctcggcgactctgtgttggattat
cttataacgaagcacttgtacggcgaatatcctaatctttctcctggactactaaccgac
atgcgctctgcttctgtgaacaatgaatgttatgctcaagtagcggtgaaatcaaacctg
cacaaacacgttctccatgcctctcatgatctccacaagcacatctccagaacagtcggt
gagtttgaacatttgtcgtctgtgcagtccagttttggatgggaatccgaaatagctttc
ccaaaggttcttggggatgtgatagaatctttagctggtgcgatacatgttgactcgggt
tacaacaaggaagtagtgtttgcgagtgtaaaacctcttctgggctgtatgataactcca
aagactgtcaagttgcatcctgtgagagagttgacagagtattgccagaaagctcagttc
gagttgagtaaagctaaaggttacgagaagggtgaagcttacttcaaggttgaggtgaaa
gccaaggaaatgagttttgctcacacatcaaaggcatctgataagaaaatggccaagaaa
ttggcttacaaagaagtcttgaatttacttaagaagagtctggactcttaa
DBGET
integrated database retrieval system
