Raphanus sativus (radish): 130494449
Help
Entry
130494449 CDS
T06014
Name
(RefSeq) pre-mRNA-splicing factor prp12-like
KO
K12830
splicing factor 3B subunit 3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130494449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
130494449
03041 Spliceosome [BR:
rsz03041
]
130494449
03036 Chromosome and associated proteins [BR:
rsz03036
]
130494449
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
130494449
Spliceosome [BR:
rsz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130494449
Complex B
130494449
Complex C
U2 SnRNP specific factors
130494449
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
130494449
TFTC complex
130494449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
130494449
NCBI-ProteinID:
XP_056841950
UniProt:
A0A9W3BRJ6
LinkDB
All DBs
Position
5:complement(37733145..37739912)
Genome browser
AA seq
1353 aa
AA seq
DB search
MMAAPEDESSAQSQSSSATAAPTPPLPPSSSAGDHYLAKCVLPPSVVLQVAYGYFRSPSS
RDVVFGKETCLELVVIGEDGIVESVCEQNVFGTIKDLAVIPRSKMGKDLLAVLSDSGKLS
FLSFSNEMHRFSPIQHVQLSSPGNSRTQLGRMLTVDSSGLFLAVSAYHDRFALFSLSTSS
MADIIHERIFYPSEDGGKSNSIEELSGTIWSMCFISKGFTESKGYDPVLAIVLNRKGSLL
NELVLFGWNIKEESICLISEYVEAGALAHSIVEVPHSSGFAFLFRIGDALLMDLRDPQNP
CCLVRTSLDLVPASLVEEHFVEESCRVQDGDDEGLSNVAASALLKLSDWDPMFIDTESDT
GKLSSKHVSSWTWEPDHNYNPRMIVCLDDGEFFVFELVYEDDGVKINISECLYKGLPCKE
ILWVEGGFLATFAEMADGTVFKLGKEKLHWMSSIQNIAPILDFSVVDDQNEKRDQMFACC
GVTPEGSLRIIRSGVNVEKLLKTAPVYQGITGTWTVKIKLHDVYHSFLVLSFVEETRVLS
VGLSFKDVTDSVGFQPDVCTLACGLVADGLLVQIHQDAVRLCMPNMDSQSDGIPVSSPFV
SSWFPGNVSISLGAVAENLIVVSTSNPCFLYVLGVKSVSSHCCEIYEIQRVELQFEVSCI
SIPQKSIGKKRSRASALDSSCKAAIPSGMERGYTFLIGTHKPSVEVLSFSEDGGGLRVLA
SGMVSLTNTMGTAIRGCIPQDVRLVLVDQIYVLSGLRNGMLLRFEWPPFSHSSGLSSQCK
EEMDIVVGERDNSLPINLVLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLHTARQS
LSYTSISFQPSTHATPVCSSECPQGILFVAENCLHLVEMVHSKRLNAQKFHLGGTPRKVI
YHSESKLLIVMRIDLCDSGTSDICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEQVLV
VGTSLSSGPAILPSGEAESTKGRILILCFVHTQNSDSGSMTICSKDGSSSQRTSPFRDEQ
LSSSSICSSPDDNSDDDIKLDEAETWHLKLACATTWPGMVLAICPYLDHFFLASAGNAFY
VCGFPNETPDKMKRFAVGRTRFMITSLRTYLTRIVVGDCRDGVLFYSYHEDVKKLHQVFC
DPAQRLVGDCFLMDANSVAVSDRQGSIAILSCKDHSDFEYSSPESNLNLNCAYHMGEVAM
AIKKGGNIYKLPADDVLRSYGLNKSIDAADDTIIAGTLLGSIFVFAPISREEYELLEAVQ
AKLVVHPLTAPVLGNDHKEFRGREIPSQATKILDGDMLAQFLELTNRQQESVLSTTPLPL
PSTIKASSKQSPSPPLMLHQVVQLLERVHYALH
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagctccggaggatgaatcttccgctcagtctcaatcatcttccgccactgcg
gctcccactcctcctcttcctccttcctcctccgctggtgatcattacctcgctaagtgc
gtcctccctcccagcgtcgtcctccaggttgcttatggctacttccgctccccttcctcc
cgcgacgtcgttttcggaaaggagacctgtctagagctggtggttataggtgaagatggg
attgttgaatcagtgtgtgagcagaatgtatttggaactattaaggatttggctgttata
cctcggagtaagatgggaaaagaccttttggctgttctttctgattctggaaagctctcc
tttctctcatttagcaatgaaatgcacaggttctctcctatacaacatgttcaactttct
agtccagggaactcgaggactcaacttggaagaatgctcactgtagattctagtggtctc
tttcttgctgtcagtgcataccatgatcgctttgctctattttccctctccacatcgtct
atggctgatattattcatgagaggattttttatccttctgaggacggtgggaagagtaac
tctatagaagaattatctggtactatttggagcatgtgtttcatttctaaaggttttact
gaatccaagggttatgatcctgttcttgccattgttttaaataggaaaggatctctcctg
aatgagttggttttatttggatggaacatcaaagaagaatccatatgtttaatatcagag
tatgtcgaagctggggctctggcacatagtattgttgaagttcctcactcctctggattt
gccttcctgtttagaattggtgatgcgctcttaatggatcttagagatcctcaaaaccct
tgctgtttggttaggacatccttagatcttgttcctgcttcattagtggaagaacatttt
gttgaagagtcgtgtagagtacaagacggagacgatgagggtctttctaatgttgctgca
tctgctttgttaaagcttagcgattgggatcccatgttcatagatactgaaagcgacact
ggaaagttgagttctaagcatgtctcttcatggacttgggagccggatcataactataat
ccccggatgattgtttgcttagatgacggtgaatttttcgtgtttgaactcgtatatgaa
gatgacggtgttaagattaatatatcagagtgtttatacaaaggtttaccatgcaaagaa
attttatgggtggaaggtggattcttggccacgtttgccgaaatggcggatggaacggtt
ttcaaattgggaaaagagaagctacattggatgagttccattcaaaacattgctccgatc
ttggatttctcggttgtggatgaccagaatgagaaacgagaccaaatgtttgcttgctgt
ggtgtaactcctgaaggctctttaagaatcattcgtagtggcgttaatgtagaaaaactt
ctgaaaaccgctcctgtttatcaaggaataactggtacctggactgttaaaataaagctt
catgatgtgtaccattcgtttcttgttctgtcttttgttgaggagaccagggttttatct
gtgggattaagttttaaagatgtcactgactcagttggtttccagcctgatgtctgcacc
ttggcatgtgggcttgttgccgatggtttattggtacagattcaccaagatgcagtaagg
ctatgcatgcccaacatggattctcagtctgatggtattccggtttcttcaccatttgtc
tcctcttggtttccaggaaacgtcagtatcagcttgggggcagttgctgaaaatctaata
gttgtgtctacgtctaacccctgtttcctgtatgttcttggggtcaaatcagtatcatct
cactgctgcgaaatctacgaaattcaacgggtggagttgcagttcgaggtttcctgcatc
tcaattcctcaaaaatctattgggaagaagagatcccgcgcttctgccctggatagtagc
tgcaaagctgcgatcccttctggtatggagcgaggctatacgtttttgattggcacacat
aagccttctgttgaggtcctctccttctcagaagatggtggtggtcttagagtccttgcc
tctgggatggtatcgctaacaaatacaatgggaactgctattcgtggatgtatccctcag
gatgtaagactcgtgttagttgatcaaatctatgttctttccgggttaagaaatgggatg
ctgcttcgttttgagtggcctcccttctcacattcatccgggttgagtagtcaatgtaaa
gaagagatggacattgttgtgggtgaaagagacaattcactacccatcaaccttgtgtta
attgccacccgacgtatcggcatcacacctgtttttctggttccgttcagtgattcacta
gattcagatatcatagctcttagtgacaggccatggttgttacacacagctcgacaaagc
ctttcctacacttccatctctttccaaccttctactcatgcaactcctgtatgctcatct
gaatgccctcaaggaattctttttgttgcagagaactgtttacacctggtggagatggtg
cacagcaaacggcttaatgcgcaaaagtttcaccttggaggcactccgagaaaggttatc
taccatagtgaaagcaaactgttgattgtgatgagaattgatttgtgtgattcgggtacg
tctgatatatgctgcgtggatccgctcagtggatcagtgttgtcatcctacaagctcaaa
cccggagaaactggaaagtcgatggagcttgtacgtgtgggaaatgagcaagtccttgtg
gttgggacgagtttgtcatctggtcctgctatactacctagtggtgaagctgaaagtaca
aaaggacgaatactcattctctgctttgtacacactcaaaactcggatagtggttcaatg
acaatctgttcaaaagatggttcatcttcccaacgtacatcaccttttcgtgatgaacaa
ctatcaagcagtagtatctgcagcagtccagatgataacagcgatgatgatatcaaactt
gacgaagctgaaacatggcatttgaaattagcatgtgcaaccacttggccgggtatggta
cttgcgatctgtccgtaccttgatcatttcttcctggcgtctgctggcaatgccttttat
gtatgtggtttcccgaacgagactcctgataagatgaagaggtttgcggtgggaaggact
cgtttcatgataacatctctgcgcacatacttgactagaattgtcgttggagattgccgt
gatggtgttctgttttattcttatcatgaggatgtgaagaaacttcaccaagtattttgt
gatccagcgcagcggttagttggtgattgctttctaatggatgccaattctgttgcagta
tctgatcgccaggggagtatagctatcctgtcttgcaaagaccattcagactttgagtat
tcaagtccggagtccaacctgaatctaaactgtgcttatcacatgggtgaggttgccatg
gctatcaaaaagggtggcaacatttacaaacttccagctgatgatgtgctgcgaagttat
ggtcttaataaaagcattgacgcagctgatgacactatcatagctggcacactcttggga
agtatattcgtctttgctcctatttcaagggaggaatatgagctcctagaagccgtccaa
gcaaagcttgtggtccatccgttgactgctcctgttcttggtaatgatcacaaggagttc
cgaggtcgagagattccgtcccaagcgacaaagattttggatggtgacatgcttgctcag
ttcttggagcttacaaatagacagcaggagtcagttttatcgacgacgcctctgccctta
ccaagcacaataaaagcaagttcaaaacaatctccttctccgcctctcatgctacaccaa
gttgtacaattgctagagcgtgtccattacgctctgcactag
DBGET
integrated database retrieval system
