Raphanus sativus (radish): 130495075
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Entry
130495075 CDS
T06014
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04142
Lysosome biogenesis
rsz04144
Endocytosis
rsz05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
130495075
04142 Lysosome biogenesis
130495075
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
130495075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
130495075
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rsz04147
]
130495075
Membrane trafficking [BR:
rsz04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
130495075
Exosome [BR:
rsz04147
]
Exosomal proteins
Proteins found in most exosomes
130495075
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
Motif
Other DBs
NCBI-GeneID:
130495075
NCBI-ProteinID:
XP_056842076
UniProt:
A0A9W3BSC5
LinkDB
All DBs
Position
5:4087426..4096379
Genome browser
AA seq
1748 aa
AA seq
DB search
MAAANAPITMKEVLTLPSIGINQQFITFTNVTMESDKYICVRETAPQNSVVIIDMNMPMQ
PLRRPITADSALMNPNSRILALKAQVPGTTQDHLQIFNIEAKAKLKSYQMPEQVSFWKWI
TPKMLGLVTQTSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCSPNEKWLVLIGIAPGS
PERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSILISFASKSFNAGQVTS
KLHVIELGAQPGKPSFSKKQADLFFPPDFADDFPVAMQVSHKFNLIYVITKLGLLFVYDL
ETASAIYRNRISPDPIFLTSEASSVGGFYAINRRGQVLLATVNEATIIPFISGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQ
AGQTPPLLQYFGTLLTRGKLNSYESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYMFLLQTILRTDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHAFLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRVAQLCEKAGLYIQSLKVVAPFYFFFVIPMTALVL
LKYIDVLSFSFVIRNFFSFSFVQHYSELPDIKRVIVNTHAIEPQALVEFFGTLSSEWAME
CMKDLLLVNLRGNLQIIVQACKEYCEQLGVDSCIKLFEQFKSYEGLYFFLGSYLSMSEDP
EIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVP
DLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPL
VEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSKVV
GKYCEKRDPTLAVVAYRRGQCDEELINVTNKNSLFKLQARYVVERMDGDLWDKVLMEENE
YRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQ
NLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVDAQLYEEAFAIFKKFNLNVQAVNVL
LDNVRSIERAVEFAFRVEEDSVWTQVAKAQLRDGLVSDAIESFIRADDATHFLEVIRATE
DANVYDDLVRYLLMVRQKVKEPKVDSELIYAYAKIERLGEIEEFILMPNVANLQQVGDRL
YDEALYEAAKIIYAFISNWGKLAVTLVKLQQFQGAVDAARKANSAKTWKEVCFACVDAEE
FRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYA
RYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWQELTYLYIQYDEFDNAATTVMNHSPEA
WEHMQFKDIVAKVANVELYYKAVHFYLQEHPDIINDLLNVLALRLDHTRVVDIMRKAGQL
RLIKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDSFDQIGLAQKIEKHELV
EMRRVAAYIYKKAGRWKQSIALSKKDNMYKDCMETASQSGDHDLAEQLLVYFIEQGKKEC
FATCLFVCYDLIRPDVALEHAWINNMLDFAFPYLLQFIRDYSGKVDELIKDKLEAQKEVK
AKEQEEKDVMSQQNMYAQLLPLALPAPPMPGMGGGPGMGGGYGPPPQMGGMPGMPPMPPY
GMPPMGGY
NT seq
5247 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagccaacgcccccatcacgatgaaagaggtcctaacgcttccgagcattggg
atcaatcagcagttcatcacgtttacgaatgttactatggagtctgacaagtacatatgt
gtgcgagagacggcgcctcagaacagcgttgtgattattgatatgaatatgccgatgcag
cctctgaggagaccaattactgctgattctgcacttatgaaccctaactcgaggatcctt
gccttgaaagctcaagttccaggaactactcaggaccatctgcagatatttaacatcgaa
gcaaaagcaaagttgaagtcataccagatgcctgagcaggtttcgttttggaaatggatt
accccaaagatgttggggttggtcacacaaacatccgtgtatcattggtcgattgaaggt
gattctgagcctgttaagatgtttgataggacagccaatttggccaacaatcaaattatt
aactataagtgctctcccaatgagaagtggttggtgttgattggtattgcccctggctct
cctgagaggccacaattggtaaaagggaatatgcagcttttctctgttgatcaacagcgg
agtcaggcccttgaagcacatgctgcttcatttgcccagtttaaggtccctgggaatgag
aatccttctattcttatatcctttgcaagcaagagctttaacgctggacaggtaacatca
aaattgcatgtcattgagcttggcgcccaaccaggaaaaccatcattctcaaagaagcag
gcagatctcttcttccccccagattttgctgatgattttcctgtagccatgcaggtctct
cacaaatttaacttgatatacgtcatcaccaagcttggcctgttgtttgtatacgattta
gagacggcttctgccatctacagaaatcggataagcccagacccaattttcttgacttct
gaagcttcttcagttgggggtttctatgccattaataggcgaggacaagttctcctggct
acagtaaatgaggctacgataataccttttatcagcggtcaattgaacaatttggaactt
gctgtcaatctggctaaaagaggaaacctccctggtgcagaaaatctggttgtccagcgg
ttccaagagttatttgctcaaacaaagtacaaagaggctgccgagcttgctgctgaatct
cctcaggggattctacggacacctgatacggtggctaaattccagagtgttccagtacaa
gcagggcaaactcctccattgttacagtattttgggacccttttgactagaggaaagctc
aattcatatgagtctttggaactgtctcgccttgttgtgaatcaaaacaagaagaacctc
ttggaaaactggttggcagaggataagttagaatgcagtgaagaacttggagaccttgtc
aagactgtagataatgacctggctctgaaaatatacatcaaagctcgagctactccaaaa
gttgtagcagcttttgcagagcgaagggagtttgacaaaatactgatttactcaaagcag
gttgggtacacacctgattacatgtttcttttgcaaaccatactccgtacggatccccag
ggagcagtaaattttgctttaatgatgtcccaaatggaaggaggttgtccagttgactac
aacaccatcactgatcttttccttcagagaaacctgatccgtgaagcgactgctttcctt
ctggatgttctgaagccaaatttacctgagcatgcttttctgcagactaaggttctggag
atcaatttggtaacctttcccaatgtggctgatgcaattttagcaaatgggatgttcagc
cactatgaccgccctcgtgttgctcagctttgtgaaaaggctggactttatatccaatct
ttgaaggttgttgctccattttacttttttttcgttatccctatgaccgccctcgtgttg
ctcaaatatatagatgtattatctttttcttttgttatccgtaacttcttttccttttcc
tttgtgcagcattactcagagttacctgatattaaacgtgtaattgtgaacacacatgct
attgagccgcaggctcttgtcgagttttttggtactctttctagcgagtgggctatggag
tgcatgaaggatcttctgctggtcaaccttagaggcaaccttcagataatagttcaggct
tgcaaggagtactgtgagcaacttggtgtcgattcatgcattaaactctttgagcagttc
aagtcgtatgaagggctatactttttcctaggttcatatttgagtatgagtgaggatcct
gagattcacttcaaatacattgaagcagctgccaagacgggtcaaataaaggaagtcgag
cgtgtcactagagagtctaacttttatgatgctgaaaagacgaaaaactttttgatggag
gctaagcttcctgatgcccgtcctttgataaatgtctgcgaccgttttggctttgtacct
gatcttactcattacctgtacacaaacaacatgcttcgttacattgaaggctacgtgcag
aaggtgaaccctgggaatgctcccttagttgtggggcagttgcttgatgacgaatgccct
gaagattttataaaaggcctcattctttctgttcgttcgttgcttcctgttgaacccctt
gttgaggaatgcgagaagagaaatcgactgcgtctcctcactcagttcttggagcatcta
gttagtgagggaagccaagatgtccatgtccataatgccttgggtaaaattatcatagac
agtaacaacaaccctgagcatttcctgaccaccaatccttactacgactctaaagttgtg
ggtaagtactgtgagaaacgtgatcccaccctggctgttgtggcatacagaagaggacaa
tgtgatgaggaactcatcaatgtcaccaacaagaactcattgttcaagttacaagccagg
tatgtagtggagaggatggatggtgacctctgggataaggttcttatggaagaaaatgaa
tatagaagacaacttattgaccaagttgtgtctactgctttacccgaaagcaagagccca
gagcaagtttctgcagctgttaaagcattcatgactgctgatctgccacatgagcttatc
gagcttcttgaaaagattgtgcttcaaaattctgcattcagcggaaactttaatctgcaa
aatctacttatactgacagctatcaaggcagatccgtctagagttatggattacattaac
aggctggataactttgatggtccggctgttggagaagtggcggttgatgcccaattatat
gaagaagcatttgcgattttcaagaagtttaacttaaatgttcaggctgtcaacgtattg
ctggataacgtcagaagcattgagcgtgctgttgagtttgctttccgtgtcgaagaagat
tctgtttggacccaagtcgccaaggctcaactcagggatgggctagtcagtgatgcaatt
gaatcttttattcgagctgatgatgccactcatttcttggaggtcatacgtgctactgaa
gatgctaatgtctatgatgacttggtcagataccttcttatggttagacagaaggtgaag
gaacccaaggttgatagtgagctcatatatgcttatgcaaagattgaaaggttgggtgag
atagaggaatttattctgatgccaaacgttgctaacctacaacaagtgggcgatcgcctg
tatgatgaagcgttgtatgaggctgccaaaataatttatgcgttcatatcgaactggggc
aagttagccgtcacacttgtgaagttgcagcagttccaaggtgctgtggatgcagcaagg
aaagccaacagtgcaaagacatggaaggaagtctgctttgcttgtgttgatgcagaagaa
ttccgactggctcaaatatgtggacttaacattatcatacaggtggatgacctggaagaa
gtcagcgagtactaccagaacagaggatgcttcaatgaattaatctcacttatggagagt
ggacttggtctggaacgggctcacatggggatcttcaccgagttgggtgtactgtacgcc
agatatcgttatgagaagcttatggaacacatcaagttgttctccactcgtctcaatatt
ccaaagcttatacgagcctgtgatgagcaacagcattggcaggaacttacctatctgtac
attcaatacgatgagtttgataatgctgcaacgactgtcatgaaccattctcctgaagca
tgggagcacatgcaattcaaagacattgtcgccaaggttgcgaatgtcgagctttactac
aaagccgttcacttctacttgcaagagcaccctgatataatcaacgatcttctcaatgtg
cttgctctgcggttagatcacacacgagtggtggatatcatgcgcaaggctggtcagctg
cgccttatcaagccctacatggttgcagttcagagcaacaatgtttctgctgtaaatgaa
gcgctgaatgagatatacgtagaagaagaagactacgataggttgcgcgagtctattgat
ttgcatgacagctttgaccagataggcctcgctcagaagattgagaaacacgagcttgtg
gaaatgagacgtgtggctgcgtatatctacaagaaagctggtagatggaagcaatcaatt
gcgttgtcgaagaaagataacatgtacaaggactgtatggaaactgcttcacaatccggc
gaccatgacctcgcagaacaacttctggtttatttcattgaacagggtaaaaaggaatgc
tttgccacatgtctctttgtctgttatgacttaatccgaccagatgttgctctggaacat
gcttggatcaacaatatgctcgactttgccttcccgtatctcctccagtttatccgagat
tactctgggaaagtggatgaactaatcaaggacaaactagaagcacagaaggaagtgaag
gccaaagagcaggaagagaaggatgtcatgtcccaacagaatatgtacgcccaattattg
ccactggctctacctgccccaccgatgccaggaatgggaggcggtccagggatgggaggc
ggttacggtccgccaccacagatgggagggatgcctggaatgccaccaatgccaccatat
ggaatgccaccgatgggaggctactaa
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