Raphanus sativus (radish): 130495940
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Entry
130495940 CDS
T06014
Name
(RefSeq) DNA mismatch repair protein MSH7-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130495940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsz03400
]
130495940
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130495940
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
130495940
NCBI-ProteinID:
XP_056843564
UniProt:
A0A9W3BWA4
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Position
6:complement(9245005..9250737)
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AA seq
1112 aa
AA seq
DB search
MQRQKSILSFFQKPSPATQGPVSVDPTRGGGGLRSTAREGGINSDASVRSVEQNVPKNVE
DDDVRGVDTPPEKVPRRVLPSNFKAAAESAGGGGASSLFSSIMHKFVKVDCPPERSGERS
RENVAPLGVSMMPDSVIPERRLNNAQPQDRDRIFSVTGRDDLRSVEEDDVLGPETPGTRP
SVPRLKRVMEDGVAFTENKVSLFDSNKRMKLFEDRVCGEKKQVNEGTKFEWLEPSRIRDA
NRRRPDDPLYDRKTLYIPTDVFKKMSASQKQYWSVKSEYMDVVLFFKVGKFYELYELDAE
LGHKELDWKMTMSGVGKCRQVGISESGIDDAVQKLLARGYKVGRIEQLETSDQTKARGAN
TIIPRKLVQVLTPSTASEGNLGPDPVHLLAIKEVKMELEKCSTAYGFAFVDCAALRFWVG
SISDDASCAALGALLMQVSPKEVIYDSKGLSREAQQALRKYTLTGSTAVQLNPLPQELGD
ADACGVRNMIESSGYFRGSSESWKSAVDGLTESGIALSALGELVNHLSRLKLEDVLKNGD
IHPYKVYSGCLRIDGQTMVNLEIFNNSCDGGHSGTLYKFLDNCVSPTGKRLLRNWICHPL
KDVESINKRLDVVEEFTANSEIMQITGQYLHKLPDLERLLGRIKSTVQSSAYLLPALLGK
KVLKQRVKSFGQLVKGFRSGIDLLLAVQKEPNMIRLLSKLCKVPILVGKRGLELFLSQFE
AAIDSDFPDYQNHDVTEENAETLTILIDLFIEKAKEWSEVIHTLSCLDVLRSFAISASLS
AGSMARPVIFPESKSTVQNQETNGPILKIQGLWHPFAVAADGQLPVPNDLLLGEAGSSSV
HPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCETCELSLVDTIFTRLGASDRIMT
GESTFLVECTEAASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHMVERVKCRMLF
ATHYHPLTKEFSSHPRVTLKHMACAFKSRSDQEPGGCDQDLVFLYRLAEGACPESYGLQV
ALMAGIPKQVVETASVAAQAMKRSIGENFKSSEVRSEFSSLHEEWLKTLVGISQVVDNDK
AMFEEEDVSDMLVCLWHEIRSSCSVAQVKAMR
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccagaaatcgattctctctttcttccagaaaccgtcgccggcgactcagggt
ccagtctctgtcgatcctactcgcggcggaggaggtttacgatctaccgcgagggaagga
ggtatcaacagcgacgcttcggtacgctccgtggagcaaaacgtgccgaaaaatgtggaa
gatgatgatgttagaggagtggatactccgccggagaaagttcctcgtcgcgtcttgccg
tctaacttcaaggcggcggctgaatccgccggtggtggtggtgcttcttctctcttctcc
agtatcatgcataagttcgtgaaagtcgattgtcctcctgaacgttctggagagaggagc
agagagaatgttgctccgcttggtgtatctatgatgcctgatagtgttattcctgaacgt
cgtttgaataatgctcaacctcaagatagagaccgtatcttcagcgtcactgggagagat
gatctaagatcagtagaagaggacgatgttcttggcccggaaacacccgggacgcgtccg
agtgttcctcgtttgaagcgagttatggaggatggggtggcttttactgagaataaggtc
tctctatttgattctaacaaaaggatgaaactgtttgaggatcgagtctgtggagagaaa
aaacaagtgaacgaagggaccaagttcgaatggcttgagccttctcggatcagggatgct
aatagaaggcggcctgatgatcccctttacgataggaagaccctctacatacccactgac
gttttcaaaaaaatgtctgcgtcgcagaagcagtattggagtgtcaagagtgagtatatg
gatgttgtgcttttctttaaagtggggaaattctatgagctgtatgagctggatgcagaa
ttaggtcacaaggagcttgactggaagatgaccatgagcggtgtgggaaaatgcagacag
gttggtatctctgaaagtgggatagatgatgcagtgcaaaagctattagctcgtggatat
aaagttggaagaatcgagcagttagaaacatctgaccagacaaaagccagaggtgcaaat
actataataccgaggaagctagttcaagtgttaaccccatcaacagcaagcgagggtaac
ctagggcctgatcccgtccatttacttgctataaaagaggtcaaaatggagctagaaaag
tgttcaactgcatatggatttgctttcgttgactgtgctgccttgaggttttgggttggg
tccatcagtgatgatgcttcatgtgctgctcttggagctttattgatgcaggtttctcca
aaagaagtgatatatgacagtaaagggctatcaagagaggcccaacaggctctaaggaaa
tatacattgacagggtctacggcggtacaattgaatccactaccacaagaattgggggat
gcagatgcttgtggagtgagaaatatgatagaatccagtggatacttcagaggttcttct
gaatcgtggaaatctgctgttgatggtctaactgaatctggaattgctcttagtgctctt
ggagagctagtcaatcatctttctaggctaaagctagaagatgtacttaagaatggggat
attcatccctacaaagtttacagcggttgtctaagaattgatggccagacgatggtaaat
ctggagatattcaacaatagttgtgatggtggtcattcagggaccttgtacaaatttctt
gataactgtgttagtccgactggtaagcggctgttaagaaattggatctgccatcccctc
aaagatgtagaaagtatcaataaaagactcgatgtggtcgaagaattcacggcaaactca
gaaattatgcaaatcactggccagtatctccataaacttccagacttagaaagactgctc
ggacgcattaagtctaccgttcagtcctcagcctatcttttgcctgctctccttgggaaa
aaagtgctgaaacaacgagttaaatcatttgggcaacttgtgaaagggttcagaagtgga
attgatcttttgttggctgtacagaaggaaccgaatatgattagactgcttagtaagctc
tgtaaagttcctatattagtgggaaaaagagggcttgagttattcctttctcaatttgaa
gcagccatagatagtgactttccagattatcagaaccatgatgtgacagaggagaatgct
gaaactctcacaatactcattgatctatttatagaaaaagccaaagagtggtctgaggtc
attcacacccttagctgcctcgatgtcctgagatcctttgcaatctctgcgagtctctct
gctggaagcatggccaggcctgttatattccctgaatcgaaaagtacagttcagaatcag
gaaacaaatgggccaatacttaaaattcaagggctatggcatccatttgcagttgcagct
gatggtcaacttcctgttccaaatgatctactccttggtgaggctggaagcagcagtgtt
catcctcggtcgttattactaacaggaccaaacatgggtggaaaatcaactcttcttcgt
gcaacatgtcttgctgttatctttgctcagcttggttgttacgtgccttgtgagacatgt
gaactctctctcgtagatactatcttcacaaggcttggcgcatctgatagaatcatgaca
ggagagagcaccttcttggtagaatgcactgaggcggcgtcagttcttcaaaacgcaact
caggattcactagttatccttgacgaactgggcagaggaactagtactttcgatggctac
gccattgcatattctgtttttcgtcacatggtagagagagtcaagtgcaggatgctcttt
gcaacgcattatcatcctctcaccaaggagttctcgtcccacccgcgggtcaccttgaaa
cacatggcttgcgcattcaaatcaagatccgaccaagaaccaggtggctgcgaccaagac
ttagttttcttgtaccgtctagctgagggagcttgtcctgagagctatgggcttcaagta
gcactcatggcgggaataccaaagcaagtggttgagacagcgtcggtggcggctcaagcc
atgaagagatcgattggagaaaacttcaagtcaagtgaggtaaggtctgagttctcaagt
ctgcacgaagaatggctcaagacattggtgggtatctctcaagtcgtcgacaacgacaag
gccatgtttgaggaggaggatgtctctgacatgttggtttgcttatggcatgagatcaga
tcttcttgctctgttgctcaagtaaaggcgatgagataa
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