Raphanus sativus (radish): 130496504
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Entry
130496504 CDS
T06014
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130496504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
130496504
03036 Chromosome and associated proteins [BR:
rsz03036
]
130496504
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130496504
Coactivators
SAGA/TFTC/STAGA complex
130496504
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130496504
STAGA complex
130496504
TFTC complex
130496504
SAGA complex
130496504
SLIK complex
130496504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
RAB3GAP2_N
Cytochrom_D1
WD40_like
Motif
Other DBs
NCBI-GeneID:
130496504
NCBI-ProteinID:
XP_056844597
UniProt:
A0A9W3BZH8
LinkDB
All DBs
Position
6:complement(14265387..14270241)
Genome browser
AA seq
643 aa
AA seq
DB search
MDPEQVDEFVMGYLKKKGFNSDGTSFSSIDYHNDPDLTKLIRSFSQSENDPSRYREGYSK
LRSWGDNSLDLYKHELLRVIYPVFIHCYINLVGKGHTQEARAFFNSFRKDHEMVHLRDLQ
KLEGVLAPSHLQEMEFARSLRQSKFNIKICQCSYDLLLQYLHRTESTLMLGIINERINFQ
VYSGQPNSASDDIESVTISGSFHETADHVNQKEIHWGLLEDSLEDRLQKTGGLLSDSEKG
QGESKADSKKRSSEIGKQGSSVKKLKKDKAGNATAKVARQETSMALSTTPRVKPELAMPV
MSTDVEESILEDLRNRVQLSSLAMPSVSFYTFVNTHNGLNSSSISHDGSLVAGGFSDSSI
KVWDMAKIGHAGSCALQDENGRRNYTLLLGHSGPVYSATFSPPGDYVLSSSADTTIRLWS
TKLNANLVCYKGHNHTVWDAQFSPSGHYFASCSHDRTARIWSMDRMHPLRMMAGHLSDVD
CVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFVGHRSMVLSLAMSPDGRYMASGDEDG
TIMMWDLSTARCITPLIGHNSCVWTLSYSGEGSLLASGSADCTVKLWDVSSSTKLTKAEE
KNGNSNRLRPLRTFPTKSTPVHALRFSRRNLLFAAGAISKPAS
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaagtagacgagttcgtcatgggttacttgaagaagaaaggcttcaac
agcgatggcaccagcttcagctccatcgattatcacaacgatcctgacctcaccaagctc
atccgctccttttcacaatcagagaatgatccatctcggtaccgtgagggttacagcaag
ctaaggtcatggggtgataactcactggacctttataagcatgagttgctccgagtgata
tatccagtgtttattcattgttacataaatctagtggggaaagggcacactcaagaagcg
agagccttctttaacagcttccgcaaagatcatgaaatggtacatctacgggatcttcag
aagctggaaggcgttcttgctccatctcatctacaggagatggagtttgctcgttctctt
agacaaagcaagttcaacattaaaatttgtcagtgttcgtatgatctgttacttcagtat
ctacatagaacagaatctactttaatgcttggtattataaacgagcgcatcaatttccaa
gtctactcaggacagcctaactccgcatctgatgacatagagtctgtcaccatttctggg
agttttcatgagacagctgatcacgtcaatcaaaaagaaatacattggggattgcttgaa
gactcgcttgaagatcgcctccaaaagacgggaggtctactctctgattccgagaaggga
caaggagaaagtaaagctgatagtaagaaaagatccagcgaaattggaaagcaaggctct
tccgtaaagaagttaaagaaggacaaagcaggaaatgcaacagcaaaagttgcacgtcag
gagaccagcatggccttgtcgacgacaccacgtgtgaaaccggaacttgccatgccagta
atgtctacggatgtagaggaatccatccttgaagacctgagaaaccgtgtgcagctgagt
agtctcgcaatgccatctgtcagcttttatacatttgttaacactcataacgggttaaac
agttcatctatatctcatgatggatctctggtcgctggtgggttctcagattcatcaata
aaggtctgggacatggcgaagatagggcatgctggcagttgtgctttgcaggatgaaaat
gggagaagaaattatacactattattgggtcactcaggaccagtttactctgccactttc
agtcctcccggagattatgttttatcttcttcagcagatacaacaataaggctgtggagc
acaaaactaaacgccaatctcgtgtgctacaagggtcataatcacactgtatgggatgct
cagtttagcccttccgggcattacttcgcaagctgttctcatgatcgtactgcccggatt
tggtcaatggaccgaatgcatcctctgcggatgatggcagggcatctatctgatgttgat
tgtgtacagtggcatcccaattgcaactacattgcaaccggttctagtgataagacggtt
agactctgggatgtccaaacaggggaatgtgtcaggatcttcgttggacacaggagcatg
gttttgtcattggcgatgtcaccagatgggagatatatggcttctggtgatgaagatgga
accataatgatgtgggacctctcaacagctcgctgcatcacacctctcattggccataat
tcatgtgtctggactctctcttacagtggagagggctctcttctggcttctggatctgcg
gactgcacagtgaaactgtgggacgtctcctcgagtaccaaattgacaaaggccgaggaa
aaaaacggtaactcaaacagactgcgaccactcagaactttccccacaaagtccacacca
gttcacgccctccgattttctcggagaaatctcttgtttgctgcaggagcgatctctaaa
cccgcaagctga
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