Raphanus sativus (radish): 130496990
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Entry
130496990 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC130496990
KO
K12589
exosome complex component RRP42
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130496990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
130496990
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130496990
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
130496990
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
130496990
NCBI-ProteinID:
XP_056845747
UniProt:
A0A6J0JH01
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Position
6:complement(1593835..1595767)
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AA seq
288 aa
AA seq
DB search
MVGVSFGEQNFIKGGIAQDLRTDGRKRLTYRDVYVETGVIPQANGSARVRIGGTDVIASV
KAELGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQICLLGGKSGAGA
GINLSSLLIKEGRVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVQVSAEVADD
EQPEIDISDEEYQQFDTSSVPVIVTLTKVGNHYIVDATAEEESQMSSAVSISVNRAGHIC
GLTKRGGSGLDPSVILDMISVAKHVSETLMNNLDSKISAAEACEDDES
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggtgggggtttcgtttggggagcaaaacttcattaaaggtgggatcgctcaagatctt
cgaactgatggtcggaaaagattgacttaccgtgacgtctatgtcgaaaccggtgttatt
cctcaggctaatggttcagctagagttaggataggtggaactgatgtgattgccagtgta
aaggctgagcttgggaggccaagttctcttcagcctgataaaggaaaggttgctgttttc
attgattgcagtccaacagcagaacctaccttcggggggagaggaggtgaggagttgtct
tctgagcttgctttggctcttcaaatctgtcttcttggcggcaaaagtggagcaggggct
ggtataaatctatcttcgcttttgatcaaagaaggaagagtctgctgggacctttacata
gatggccttgtcattagctccgatgggaatctattggatgcacttggtgctgccatcaag
gctgctttaaccaacacagctataccaaaagtccaagtttcagctgaagtagccgatgat
gagcagccagagattgacatcagcgacgaagagtatcaacagtttgacacttccagtgtc
ccggtcatagtcacgttaactaaagtggggaatcattacatagttgatgcaacagcggaa
gaggagtctcagatgagctcagccgtgtctatatccgtgaaccgggcgggacatatctgt
gggttaaccaaaagaggagggtctggtttagacccgagcgtcatccttgacatgatctct
gtggctaagcatgtgtccgagactctgatgaacaatcttgattctaagatttcagctgca
gaggcctgtgaagacgacgagtcttga
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