Raphanus sativus (radish): 130498344
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Entry
130498344 CDS
T06014
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130498344
03015 mRNA surveillance pathway
130498344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
130498344
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130498344
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
Nup35_RRM_2
RRM_3
C1ORF64
Motif
Other DBs
NCBI-GeneID:
130498344
NCBI-ProteinID:
XP_056847613
UniProt:
A0A9W3C813
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Position
8:complement(2890479..2893378)
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AA seq
364 aa
AA seq
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MAKASRGRRSPSVSGSSSRSSSSRSRSRSRSLSSSSSSPSRSVSSGSRSPPPPPRGKRNA
TPIRESLVLHVDSLSRNVNEGHLKEIFGNYGEVVHVELAIDRAVNLPKGYAYVEFKARAD
AEKALLFMDGGQIDGKVVKAKFTLPARQKVSSPSPKPVSGVPKREAPKPDNAAANVEKDG
AGRPREISPRRRSPLPRRLPDSSPRRRPSPPIRRRGDTPPRRRAESPSRGRSPSSPPPRR
HRSPPRGSPRRIRGSPVRRRSPPPLRRRSPPRRLRSPLRRSPIRRRSRSPIRRPVRSRSK
SLSPRRGRGPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSGSPP
PRKA
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcaagccgtggccgtcgttcaccttccgtctcagggtcttcatctcggtcc
agctcctccagatctcgttcccgatctagatcgctctcttcttcttcttcatctccttcg
cggagcgtcagttccgggagtcgtagtcctcctcctccacctcgtggaaaaaggaatgct
acacctattcgagaatctcttgttctccatgtcgattctcttagcaggaatgtaaacgaa
gggcatcttaaagaaatttttggcaactatggtgaagttgtacacgtagaacttgcaatt
gatcgagctgttaatcttccaaaaggatatgcttatgttgagttcaaggcgagagctgat
gctgagaaagctctgctgtttatggatggtggtcaaattgacggaaaggttgttaaagca
aagttcacactaccagcgcgtcagaaagtatcttcaccatcccctaaacctgtctcaggt
gtaccaaagagagaggctccaaaacctgataatgccgctgctaacgttgagaaagatggg
gccggacgcccaagagagatttctccgagaaggcgatcaccactacctaggagattacct
gattcttcccctcgccggaggccgagccctcctatccgccgtcgtggtgatacaccaccc
agacgcagggcagaatcgccatctagaggccgttctccatcttccccacctccaagaaga
catagatctcctccaaggggctcccctagaagaatccgtggcagtcctgttcgaagacgg
tctcctcctcctctaaggcgaaggtcacctccaaggagactacgcagtcctctcagaaga
tctccaatccgcagacgtagccggtccccgattcgtaggcctgttcgctctcgctcaaaa
tccctctcaccccgcaggggacgaggtccagctgggagacgtgggaggtcatcttcttac
tccagttcgccaagtcccagaaggattcctaggaagatttccaggagccgcagtcctaag
aggccactgagaggaaaaagaagcagcagtaacagcagcagcagcagcggctcaccgcct
cctcgcaaagcataa
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