Raphanus sativus (radish): 130498958
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Entry
130498958 CDS
T06014
Name
(RefSeq) serine/arginine-rich splicing factor RS40
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130498958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
130498958
Spliceosome [BR:
rsz03041
]
Common components
Common spliceosomal components
SR proteins
130498958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RNA_bind
Nup35_RRM_2
DbpA
RRM_Nup35
RRM_3
RRM_occluded
DUF2129
Motif
Other DBs
NCBI-GeneID:
130498958
NCBI-ProteinID:
XP_056848801
UniProt:
A0A9W3CB27
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All DBs
Position
8:8521401..8523675
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AA seq
187 aa
AA seq
DB search
MKPVFCGNFEYDAREGDLERLFRKYGRVERVDMKAGFAFVYMEDERDAEDAIRALDRIEF
GRKGRRLRVEWTKGERGGDRRSGGGGGSRRSSSLRPSKTLFVINFDADNTRTRDLERHFE
PYGKIVNVRIRRNFAFVQYEEQEDATRALEATNNSKLMDKVISVEYAMKDDDARGNGHSP
ERRRDRF
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgaagccagtcttctgtgggaactttgagtatgatgcgcgtgagggcgatctcgaaagg
ctattcaggaagtacggaagggtcgagagggtggatatgaaagctgggtttgctttcgtg
tacatggaagatgagagggatgctgaggatgctatccgagcccttgaccgcattgaattt
gggcgcaagggacgcagactccgtgttgagtggacaaagggtgagcgtggaggcgataga
agatctggtggtggtggtggttcaaggagatcctcatccttgaggccttccaagactctg
tttgtgatcaactttgatgcggacaatactcggacccgggatctagagagacactttgaa
ccgtatggcaaaattgtaaacgttaggatcaggaggaactttgcatttgtccagtacgag
gagcaagaggatgccactcgagctcttgaggctacaaacaacagtaagctgatggataag
gtgatctcggtggagtatgcaatgaaagatgatgatgcaagagggaacggacacagtccc
gaaagacgccgtgataggttctag
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