Raphanus sativus (radish): 130500437
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Entry
130500437 CDS
T06014
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130500437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
130500437
03036 Chromosome and associated proteins [BR:
rsz03036
]
130500437
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130500437
Coactivators
SAGA/TFTC/STAGA complex
130500437
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130500437
STAGA complex
130500437
TFTC complex
130500437
SAGA complex
130500437
SLIK complex
130500437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
eIF2A
RAB3GAP2_N
LisH
WD40_like
Cytochrom_D1
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
130500437
NCBI-ProteinID:
XP_056851513
UniProt:
A0A9W3CIU0
LinkDB
All DBs
Position
9:30446465..30451195
Genome browser
AA seq
676 aa
AA seq
DB search
MDPEQLDEFVMGYLKKKGFNGAAKQLQEALHNNNNNNGTGSSSSFNSTDYHNDPELTKLI
RSFSQSENDPTRYRNGYSNLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEAR
AFFNSFRKDHEMIHLRDLQKLEGVLVPSHLEEMEFARSLRQSKVNIKICQYSYDLLLQYL
HRTESTLMLGIINEHINFQVYSGQPNSSSDDIDAVTIVGSFQETADHVNQKEIQWGLLED
SLEDRLEKTGSLLTDSEKGQGESKDGDVDDSNKKRSTEIGKQGSSLKKLKKDKAGNATAK
VARQETSTVSPAPRVKSELALPVMSTDVEESILEDLRNRVQLSSVAMPSVSFYTFVNTHN
GLNCASISHDGSLVAGGFSDSSIKVWDMAKIGQAGSGTLQGESDTNDQVAGPNGRRNYTL
LLGHSGPVYSATFSPPGDFLLSSSADTTIRLWSTQLNANLVCYKGHNYPVWDVQFSPFGH
YFASCSHDRTARIWSMDRVQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQT
GECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLS
YSGEGSLLASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFS
RRNLLFAAGALSKPTS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaactcgacgagttcgtaatgggctacttgaagaagaaaggtttcaac
ggcgcagctaaacagctccaagaagctctccacaacaacaacaacaacaatggtactggc
agcagcagcagcttcaattccaccgattaccataacgatcctgagctcaccaagctcatt
cgctcattctctcaatcagagaatgatcccacgaggtaccgtaatggttacagcaatctt
aggtcgtgggcttataactcgttggatctttataaacatgaattgctcagagtgatgtat
ccagtgtttattcattgttacatggatctcgttggtaaagggcacactcaagaagcgaga
gccttctttaacagcttccgcaaagatcatgaaatgatacatttacgggatcttcagaag
ctggaaggcgttcttgttccttctcatctagaggagatggagtttgctcgttctcttaga
caaagcaaggtcaacatcaagatttgccagtattcatatgatctgttacttcagtatcta
cataggacggaatctactttaatgcttggtattattaacgagcacatcaatttccaagtc
tactcgggacagccaaactcctcatctgatgacatagacgctgtcacaattgttgggagt
tttcaggagacagctgatcacgtcaatcaaaaagaaatacagtggggattgcttgaagac
tcgctcgaagatcgccttgagaagacgggaagcctgctgactgattctgagaagggacaa
ggagaaagtaaagacggggacgttgatgatagtaataagaaaagatccaccgaaattgga
aaacaaggctcttccttaaaaaagttaaagaaggacaaagcaggaaatgcaacagcaaaa
gttgcacgtcaggagaccagcacggtgtcgccggccccacgtgtaaaatcagaacttgcc
ttgccagtcatgtcaacggatgtagaggaatccatccttgaagacctgagaaaccgtgtg
cagctgagtagtgtcgcaatgccatctgtcagcttttatacgtttgttaatactcataac
gggttaaactgtgcatctatatctcatgatggttctttggttgctggtgggttctcagat
tcgtcaataaaggtctgggacatggcgaagataggacaagctggcagtggtactttgcag
ggtgaaagtgatacaaatgatcaagtcgctggaccaaatggcagaagaaattatacatta
ttactgggtcactcagggccagtttactcggccactttcagtccacctggagatttttta
ttatcttcttcagcagatacaacaatacggctttggagcacacaactaaacgccaatctc
gtgtgctacaagggccataattaccctgtatgggatgtccagtttagccctttcggccat
tactttgcaagctgttctcatgatcgcactgcacggatttggtcaatggaccgagtacaa
cctctgcggataatggcagggcatctatctgatgttgattgtgtacagtggcatcccaat
tgtaactacattgcaaccggttctagcgataagacggtgagactctgggatgtgcaaact
ggggaatgtgtcaggatattcattggacacaggagtatggttttatcattggcgatgtca
ccagatgggagatatatggcctctggtgatgaagatggaaccataatgatgtgggacctc
tcaacagctcgctgcatcacacctctcatgggccataattcatgtgtatggagtctctct
tacagcggtgaagggtctcttctggcttctggatctgcggactgcacagtgaaactctgg
gacgtcacttcaagtaccaaattgaccaaggccgaggaaaaaaatggaaactcgaacaga
ctgcgctcactcaggactttccccaccaagtccacaccagttcacgctctcagattttct
cggagaaacctgctgtttgctgcaggagcgctctctaaacccacaagctga
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