Raphanus sativus (radish): 130501056
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Entry
130501056 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: phytochrome B-like
KO
K12121
phytochrome B
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
130501056
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
HATPase_c
PAS_4
PAS_8
PAS_9
PAS_3
Motif
Other DBs
NCBI-GeneID:
130501056
NCBI-ProteinID:
XP_056851926
UniProt:
A0A9W3CK92
LinkDB
All DBs
Position
Unknown
AA seq
1109 aa
AA seq
DB search
MVSGVSGAGRGRHHTESMSKAIQQQYTVDARLHAVFEQSGKSFDYSNSLKTTTYDSSSSS
VLAEHQITDYLSTIQRGGYIQPFGCMIAVEEPTFAIIAYSENAREMLGLLLTPHSVPILA
MGADLRSLFTHSSSLLLERAFLAPEITLLNPVWIHSKNTGKPFYAILHRIDVGVVIDLEP
SRTEDPALSISGAVQSQKLAVRAISRLQSLSTGGEEDIKLLCDTVVESVRDLTGYDRVMV
YKFHEDEHGEVVAESRREDLEPYVGLHYPATDIPQASRFLFKQNRVRMIVDCHAKPVLVV
QDEKLTQSVCLVGSTLRAPHGCHSQYMANMGSNASLVMAVIINGNEEDESGRSFTRRLWG
LVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLSDMLLRD
SPAGIVTQSPSIMDLVRCDGAAFLHRGKYYPLGVAPSEAQIKDVVEWLLASHAGSTGLST
DSLRDAGYPGAAGLGDEVCGMAVACITKRDYLFWFRSHAAKEVKWGGARHRPEDRDDGHR
MHPRSSFIAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKEAEADGAVQSCGGVGAVAR
EMVRLIETAAAPIFAVDCGGRVNGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVDK
LISRALRGEEDKNVEVKLKTFSPDLQGKAVFVVGNACTRKDYLNNIVGVCFVGQDVTGEK
IVMDNFITLQGDYRAIVHSPNPLIPPIFAADENTCCLEWNTAMERLTGWSRGEVIGKLLV
GEVFGSCCRLRGLDALTKFMIVLHNAVGGQETEKFPLPFFDRNGKFVQALLTANKRVSLE
GKVVGAFCFLQIPSLEALTVERRQETECFTKEKELAYVCQVIKSPLSGLRFSNSLLEGTE
LNENQKQFLETSVSCEKQISRIVTDMDLERLENGSFELLREEFYLGSVINAVVSQAMFLL
RERSVQLIREIPEEIKSIAVYGDQTRTQQLLAEFLLSIIRYAPSQEWVEIHLSQVSKQMV
DGSSSIRTEFRMACPGEGLPPELVSDMFHSSRWTSPEGLSLSVCRKILKLMNGEVQYIRE
SERSYFLIILELPVPPLSTASGDMMLLMS
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggtttcaggtgtcagcggcgccggccgtggccgtcaccacacggagtcaatgagcaaa
gccatacaacaacagtacacagtcgacgcgagactccacgccgtcttcgaacaatcaggc
aaatccttcgactactcaaactccctcaaaacgacaacgtacgactcctcctcctcctcc
gttcttgccgagcaccagatcaccgactatctctcgacgatccagcgcggcggctacata
cagcctttcggttgcatgatcgccgtcgaagagcccaccttcgccatcatcgcctatagc
gagaacgcgcgggagatgctaggcctcctcctcactccccactcagttcccatcctcgcc
atgggagcagacctccgctctctcttcacccactccagctctctcctcctcgaacgcgcc
ttcttggctccagagatcacgctcctcaacccggtctggatccactccaagaacaccggc
aagcccttctacgcgatcctacacaggatcgacgtcggagtcgtcatcgatttagaacca
tccagaaccgaagatccggctctctctatatccggagccgtgcagtcgcagaagctcgct
gttcgcgccatctctcggttacagtctctctccaccggtggagaagaagacatcaagctt
ctctgcgacaccgtcgtggaaagcgtcagggacctgaccggatacgaccgtgtgatggtc
tacaagtttcacgaagacgagcacggagaagttgttgcagagagtcggagagaggatcta
gagccttacgtcggcttacattatcccgccactgatatcccgcaagcgtcgcggttcttg
tttaaacagaaccgcgtccggatgatcgtcgattgtcacgctaaaccggttctcgtggtc
caagacgaaaagctgactcagtctgtgtgtttggttggctctactcttagagctcctcac
ggttgccactctcagtacatggctaacatggggtctaatgcctctttagtgatggcggtt
ataataaacggtaacgaagaagatgagagtgggagaagctttacgaggcggctttggggt
ttagtcgtttgccaccacacctcctctcgctgcataccgttccctctgaggtacgcctgc
gagtttctgatgcaggcgtttggtttgcagctcaacatggagctgcagttagctcttcag
atgtcggagaagcgcgtgttgaggacgcagacgctgttatccgacatgcttctgcgtgac
tctcccgcagggatcgtcacgcagagtcctagcatcatggacctggtgagatgcgacggc
gccgcgtttctccaccgcgggaagtactatcctttgggcgttgctccgagcgaggctcag
ataaaagacgttgttgagtggttgcttgcgagccacgccgggtcgaccggcttgagcact
gatagtttacgcgacgccgggtatccgggtgcggctggactaggcgatgaggtgtgcggt
atggcggtcgcgtgcatcacgaagagagattatctcttctggttccgttcccacgcggct
aaagaagtcaaatggggtggcgctaggcatcgtcctgaggatagagacgatgggcatagg
atgcatcctcgctcgtctttcatcgcgtttctcgaagttgttaagagcaggagtcagccg
tgggagactgcggagatggacgcgattcattctctccagctgattctgagagactctttt
aaagaagctgaggcagatggtgcggttcagagttgtggaggagtaggtgcggttgcgaga
gagatggttagactcattgagacagcagctgcgcctatattcgctgtagactgtggagga
cgtgtgaatggatggaacgctaagattgcggagttgactggtctctctgttgaagaggct
atggggaagtctttggtctctgatctaatatacaaagagaatgaagaaactgttgataag
ctcatttctcgtgcgttgagaggggaggaggacaagaacgtggaggtgaagctgaagact
ttcagccctgacttacaagggaaagcggttttcgtggttgggaatgcgtgtacgagaaag
gactacttgaacaacattgtcggggtgtgtttcgttggacaggacgttaccggtgagaag
atcgttatggacaatttcatcaccttacaaggagactacagagccatcgtccacagtccc
aaccctttgattccgccgatctttgcggcagacgagaacacttgctgcctggagtggaac
actgcgatggaaaggctcaccggttggtctcgcggcgaagtgatcgggaaactgcttgtt
ggtgaagtgtttgggagctgttgcaggctcagaggtcttgatgcgttgaccaagttcatg
attgtgttgcataatgcggtcggtggtcaagagactgagaagttccctttgccgttcttt
gatcggaacgggaagtttgttcaagctctgttgactgctaacaagagggttagcctcgag
gggaaggtcgttggagctttctgtttcttgcagattccgagtcttgaggctttaacagtc
gaaagaaggcaggagacagagtgtttcacaaaggagaaagagctagcttacgtttgtcag
gtgataaagagtcctttgagcggtttgcgtttctcaaactcgttgctggaaggtacggag
ttgaatgagaatcagaaacagtttcttgaaacgagtgtttcttgcgagaagcagatctcg
aggattgtcactgacatggatcttgaaagacttgaaaacggttcgtttgagctgcttaga
gaggagttttatctcggaagtgtcatcaacgcagttgtaagccaagcgatgttcttatta
agggagagaagtgttcagctgatccgtgagattcctgaagagatcaaatcaatagctgtt
tatggagaccagacaaggactcaacagctattagctgagtttctgctgagtatcatccgg
tatgcaccgtcacaagagtgggtagagatccatctaagccaagtttcaaagcaaatggtt
gatggttcctcctctatccgcacagaatttagaatggcgtgtccaggtgaaggcctacct
ccagagttggtcagtgacatgttccacagcagcaggtggacgagtcctgaagggttaagt
ctaagcgtgtgtagaaagattctaaagctcatgaacggtgaggttcaatacataagagag
tcagaacgctcctatttcctcatcattctcgaactcccagttcctcctttatcaacagct
agcggcgacatgatgttgttgatgtcatag
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