Raphanus sativus (radish): 130501469
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Entry
130501469 CDS
T06014
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
130501469
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
130501469
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
130501469
NCBI-ProteinID:
XP_056852380
UniProt:
A0A6J0KUL4
LinkDB
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Position
Unknown
AA seq
406 aa
AA seq
DB search
MQTKKLFISIVSFLLYAPFILSSPVPDPEAVVDEVHKSINASVAGRRKLGYLSCTTGNPI
DDCWRCDPHWETNRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDDPVTPKPGTLRHAVV
QDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIH
DCKPGGNAMVRSSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIMGSTAI
TLSNNYMTHHDKVMLLGHSDSYTRDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWEMYAIGGSADPTINSQGNRFLAPDIRFSKEVTKHEDAPESEWKSWNWRSSGDLLLNG
AFFTPSGGSSSSGYAKASSLGARPSSLVGPLTVGSGALNCRKGSRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgaagaagctctttatctccatagtctcctttcttctctatgctccgttcatc
ttatcttcaccagtaccagaccctgaagctgttgtcgatgaagttcacaagagcattaat
gcgtcggttgctggaagaaggaagttaggttacctctcatgcaccactggtaaccctatc
gacgactgttggcgatgcgacccacactgggagaccaaccgtcaacgtctcgcagactgt
gccatcgggttcggcaagaacgctataggaggccgagacggtcgtatctacgtggtgaca
gactcaggaaacgacgacccagtgacacccaaacccggaacgttaagacacgccgtggtc
caagacgagccactatggatcattttccaacgagacatgaccattcagctgaaagaagag
ctgatcatgaactctttcaagaccatagacggtcgtggagcgtcagtacacatctctggt
gggccatgcattacgatccagtacgtgacaaacatcatcatccatgggatccatatccat
gactgtaagccaggtgggaacgctatggtgcggagctcaccacggcattatggatggaga
acgatatcggacggtgacggtgtctcgatctttggagggagtcatgtttgggttgaccat
tgttcgttatctaactgcgaagacgggcttattgatgccattatgggctccacggctatt
actctgtctaacaattacatgacgcatcatgacaaggtcatgttgcttggccatagtgac
tcttacactcgtgacaagaacatgcaaatcaccattgcttttaaccactttggtgaaggt
cttgttcaaagaatgccaaggtgtagacatgggtacttccatgtggtgaacaatgactat
acacattgggagatgtatgctattggtggaagtgctgaccctacaatcaatagtcaaggg
aacagatttttggccccggatatcagatttagcaaagaagtgactaagcatgaggacgcc
ccagagagtgagtggaagagttggaactggagatcctctggtgatttattattaaatggt
gcgttttttacgccttccggtggttcatcctcctctggctacgccaaggcttcgagtctt
ggggctagaccgtcttctctagttggaccgttgacggttggttctggtgcattgaattgc
cgcaagggttcccgttgctga
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