Raphanus sativus (radish): 130503235
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Entry
130503235 CDS
T06014
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130503235
09123 Folding, sorting and degradation
03018 RNA degradation
130503235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
130503235
03041 Spliceosome [BR:
rsz03041
]
130503235
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130503235
mRNA degradation factors
5'-3' decay
Lsm complex
130503235
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130503235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
130503235
NCBI-ProteinID:
XP_056853896
UniProt:
A0A6J0JYG2
LinkDB
All DBs
Position
Unknown
AA seq
89 aa
AA seq
DB search
MASNNPSQLLPSELIDRCIGSKIRVIMKGDKELVGVLKGFDVYVNMVLEDVTEYEITAEG
SRVTKLDQILLNGNNIAILVPGGAPEDAE
NT seq
270 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaacaatccgtcgcagcttcttccatcagagctaatcgacaggtgcatagga
tcgaagataagggtgataatgaaaggagataaggagctcgttggtgttctcaaaggcttc
gacgtttacgtcaacatggtccttgaggatgtcaccgaatatgagattacagcagaagga
agtcgggtcactaagcttgatcagattctgctcaatggcaacaacatcgccattttggtg
cctggtggagctccagaagatgcagaataa
DBGET
integrated database retrieval system