Raphanus sativus (radish): 130503494
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Entry
130503494 CDS
T06014
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130503494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
130503494
03036 Chromosome and associated proteins [BR:
rsz03036
]
130503494
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130503494
Coactivators
SAGA/TFTC/STAGA complex
130503494
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130503494
STAGA complex
130503494
TFTC complex
130503494
SAGA complex
130503494
SLIK complex
130503494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
eIF2A
RAB3GAP2_N
LisH
WD40_like
Cytochrom_D1
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
130503494
NCBI-ProteinID:
XP_056854094
UniProt:
A0A9W3CRM4
LinkDB
All DBs
Position
Unknown
AA seq
677 aa
AA seq
DB search
MDPEQLDEFVMGYLKKKGFNGAAKQLQDALHHNNNNNNGTGSSSSFNSTDYHNDPELTKL
IRSFSQSENDPTRYRNGYSNLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEA
RAFFNSFRKDHEMIHLRDLQKLEGVLVPSHLEEMEFARSLRQSKVNIKICQYSYDLLLQY
LHRTESTLMLGIINEHINFQVYSGQPNSSSDDIDAVTIVGSFQETADHVNQKEIQWGLLE
DSLEDRLEKTGSLLTDSEKGQGESKDGDVDDSNKKRSTEIGKQGSSLKKLKKDKAGNATA
KVARQETSTVSPAPRVKSELALPVMSTDVEESILEDLRNRVQLSSVAMPSVSFYTFVNTH
NGLNCASISHDGSLVAGGFSDSSIKVWDMAKIGQAGSGALQGESDTNDQVAGPNSRRNYT
LLLGHSGPVYSATFSPPGDFVLSSSADTTIRLWSTQLNANLVCYKGHNYPVWDVQFSPFG
HYFASCSHDRTARIWSMDRVQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQ
TGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSL
SYSGEGSLLASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRF
SRRNLLFAAGAISKPTS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaactcgacgagttcgtaatgggctacttgaagaagaaaggtttcaac
ggcgcagctaaacagctccaagatgctcttcaccacaacaacaacaacaacaatggtact
ggcagcagcagcagcttcaattccaccgattaccataacgatcctgagctcaccaagctc
attcgctccttctcccaatcagagaatgatccaacgaggtaccgtaatggttacagcaat
cttaggtcatgggcttataactcgttggatctttataaacatgaattgctcagagtgatg
tatccagtgtttattcattgttacatggatctggttggtaaagggcacactcaagaagcg
agagccttctttaacagcttccgcaaagatcatgaaatgatacatttacgggatcttcag
aagctggaaggcgttcttgttccttctcatctagaggagatggagtttgctcgttctctt
agacaaagcaaggtcaacatcaagatttgtcagtattcatatgatctgttgcttcagtat
ctacataggacggaatctactttaatgcttggtattattaacgagcacatcaatttccaa
gtctactcgggacagccaaactcctcatctgatgacatagacgccgtcacaattgttggg
agttttcaggagacagctgatcacgtcaatcaaaaagaaatacagtggggattgcttgaa
gactcgctcgaagatcgccttgagaagacgggaagcctactgactgattctgagaaggga
caaggagaaagtaaagacggggacgttgatgatagtaataagaaaagatccaccgaaatt
ggaaagcaaggctcttccttaaaaaagttaaagaaggacaaagcaggaaatgcaacagca
aaagttgcacgtcaggagaccagcacggtgtcgccggccccacgtgtaaaatcagaactt
gccttgccagtcatgtcaacggatgttgaggaatccatccttgaagacctgagaaaccgt
gtgcagctgagtagtgtcgcaatgccatctgtcagcttttatacgtttgttaatactcat
aacgggttaaactgtgcatctatatctcatgatggttctttggttgctggtgggttctca
gattcgtcaataaaggtctgggacatggcgaagataggacaagctggcagtggtgctttg
cagggtgaaagtgatacaaatgatcaagtcgctggaccaaatagcagaagaaattataca
ttattactgggtcactcagggccagtttactcggccactttcagtccacctggagatttt
gtattatcttcttcagcagatacaacaatacggctgtggagcacacaactaaatgccaat
ctcgtgtgctacaagggccataattaccctgtctgggatgtccagtttagccctttcggc
cattactttgcaagctgttctcatgatcgcactgcacggatttggtcaatggaccgagta
caacctctgcggataatggcagggcatctatctgatgttgattgtgtacagtggcatccc
aattgtaactacattgcaaccggttctagtgataagacggtgagactctgggatgtgcaa
actggggaatgtgtcaggattttcattgggcacaggagtatggttttatcattggcgatg
tcaccagatgggagatatatggcctcgggtgatgaagatggaaccataatgatgtgggac
ctctcaacagctcgctgcatcacacctctcatgggccataattcatgtgtgtggagtctc
tcttacagcggcgaggggtctcttctggcttctggatctgcggactgcacagtgaaactg
tgggacgtcacttcaagtaccaaattgacaaaggccgaggagaaaaatggaaactcgaac
agactgcgctcactcaggactttccccaccaagtccacaccagttcacgctctcagattt
tctcggagaaacctgctgtttgctgcaggagcgatctctaaacccacaagctga
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