Raphanus sativus (radish): 130503600
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Entry
130503600 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH14-like
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsz03400
]
130503600
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130503600
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
130503600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
T2SSE
SWI2_SNF2
DEXQc_Suv3
AAA_19
Helicase_PWI
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
130503600
NCBI-ProteinID:
XP_056854201
UniProt:
A0A9W3CRK1
LinkDB
All DBs
Position
Unknown
AA seq
2084 aa
AA seq
DB search
MLAQLPRLTSSLRDPLDIDQAYLRRKTILQTLNKPRSSGSRRLDESDLARRIVHQWEGAS
PEVRQAYKQFIGAVVELIDREVPSEEFREVAFTAYRLFGKPVDEEEESGFSVKSVTEKKL
ELENVVGHGVSDANLKNVASFALALYSIQPAHESEVYADEVDDGAEFGADLVFNLPSRFL
VEESLGEGGFEDEERSEAHASFSEGWSDVSDMTKNQNAGKFDLSWLRDACGQLVRDSNSQ
LSRDELAMAICRFLDSDKPGEEIAGDLLDLVGDGAFETVQDLIMHRKEIVDAIHHGQMIL
KSDKTASNTQTRMPTYGTQVTVQTESSKQIEKLRRKEEKKNKRSAELGLESEISEANFSH
LLEASEKNSGFDDLIGSGETNSLSFALPQGTVRKHLKGYEEVFIPPTPTAQLKPGEKLIE
IKELDDFAQAAFHGYKTLNRIQSRIFQTVYNTNENILVCAPTGAGKTNIAMISVLHEIKQ
HFRDGFLHKNEFKIVYVAPMKALAAEVTSAFNRRLAPLNMVVKELTGDMQLTKSELEETQ
MIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGAVIEALVARTLRQVESTQT
MIRIVGLSATLPSYLQVAQFLRVNADTGLFYFDSSYRPVPLAQQYIGITEHNFAAKNALL
NEICYKKVADSVRQGHQAMIFVHSRKDTSKTAEKLIDLARENETLDLFTNETHPQFHIRK
KEVIKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGVNLPA
HTVLIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLL
TSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEI
IADPSLTLKQRALVAEAARSLDKAKMMRFDEKSGNFYCTELGRVASHFYIQYSSVETYNE
MLKRHMNESEIIDMVAHSSEFENIVVREEEQHELETLARSCCPLEVKGGPSNKHGKISIL
IQLYISRGSIDAFSLVSDASYISASLARIMRALFETCLRKGWCEMTLFMLEYCKAVDRQL
WPHQHPLRQFDRDIPFDTLRKLEERGADLDRLYEMEEKDIGALIRYNPGGRLVKQHLAYF
PSIQLTATVSPITRTVLKVDLLITPDFIWKDRFHGAALRWWILIEDTENDYIYHSDLFTL
TKRMARGEPQKLSFTVPIFEPHPPQYYVHAISDSWLHAESFYTISFHNLALPEARTSHTE
LLDLKPLPVTSLGNRLYESLYKFSHFNPIQTQIFHVLYHTDNNVLVGAPTGSGKTISAEL
AMLRLFSTQPDMKVXVLTPLKAIVRERMKDWKKHLVAPLGKEMVEMTGDYTPDLVALLSA
DIIISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLLGADRGPILEVIVSRMRYISSQTE
RSVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPIEVHIQGYPGKYYCPRMNSM
NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSVSEEDLQMVLS
QITDQNLRHTLQFGIGLHHAGLNDQDRSVVEELFVNNKIQVLVSTSTLAWXVNLPAHLVI
IKGTEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPF
PVESSLKERLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGLEGTQDESVC
SYLSRLVQDTFDDLEDSGCLKVTEDSVEPMMLGTIASQYYLSYMTVSMFGSNIGPDTSLE
AFLHXLAGASEYDELPVRHNEEIYNKTLSEKVRYRVDNNHLDDPHTKANLLFQAHFSQLA
LPITDYNTDLKSVLDQSIRILQAMIDICANSGWLTSSLTCMRLLQMVMQGMWSDQDSSLW
MIPCMNEDLLGSLTARGIHTLHQLLELPRESLKTVTGNFSAPKLSQDLQRFPRIQMNVRL
QRKDSDRPSTLEIRLEKISKRNSSRALAPRFPKVKDEAWWLVLGDTSTSELFAVKRVSFT
GRLITRMELPPNITSLQDTKLFLVSDCYLGFEQEHSIEQRPARR
NT seq
6255 nt
NT seq
+upstream
nt +downstream
nt
atgttagctcagcttcctcgcttgacaagctctctaagagacccactcgacatcgatcaa
gcctacctccgccgcaaaactatactccaaactctcaacaagcctcgcagctctgggagt
cgccgccttgatgaatctgatcttgctaggaggatagttcatcaatgggaaggagcttct
ccagaagtgaggcaagcatacaagcagtttattggagctgtagtggagttgatagatcgg
gaagttccatcagaggagttccgtgaggttgcttttacagcgtatcgtctgtttggcaag
ccagtggatgaggaggaagagagtggttttagtgttaagagcgttactgagaagaagttg
gagttggaaaatgttgttgggcatggtgtctcagatgctaatttaaagaacgtggcctcc
tttgctctggccctctactcgatacagcctgctcatgagtctgaagtatatgcggatgag
gttgatgatggagctgagtttggtgccgaccttgtttttaatctaccaagtcgttttctg
gtggaagaatctcttggcgagggaggatttgaggatgaagaaagaagtgaagctcatgca
tcgttttctgaagggtggagtgatgtcagtgacatgacaaagaaccaaaatgcaggaaaa
tttgatttaagttggcttagagatgcatgcggacagttggttagagatagcaattcacaa
ctttcccgtgatgaactagctatggctatatgtaggtttctggattcggataagcctggt
gaagagatagctggagatttgttggatcttgttggggatggcgcatttgagactgttcaa
gaccttattatgcatcggaaggagattgttgatgctatccatcatggtcagatgattctc
aagtctgacaaaacagcttcaaacacccaaacccggatgcctacatatggcacacaggtt
actgttcaaacagaatcctcaaagcaaattgaaaaacttcggcgtaaggaggaaaagaaa
aacaaacgcagtgccgagcttggtttagagagtgaaatatcggaggccaatttttctcat
ttactagaagcaagtgaaaagaatagtgggtttgacgacctgatcgggtctggagaaacc
aattctctttcctttgctctcccacaaggtactgtaaggaagcacttaaaaggatatgag
gaagtctttatcccgccaacccctaccgcacaattgaaaccaggcgagaagctgatcgag
ataaaggaattggatgacttcgctcaagctgcttttcatgggtacaaaactttaaaccgt
attcagagtcgaatatttcagacagtttacaacaccaatgagaatatattggtctgtgct
ccaacaggagctggaaaaacaaatattgctatgatctctgtcttacatgagattaaacag
cacttcagggacggcttcttgcacaaaaacgagtttaagattgtttatgtagctcctatg
aaggcgttagcggcagaggtcacatcagcttttaatcgtcgtctcgctccattaaatatg
gttgtgaaggagcttacaggggatatgcaactcaccaagagcgaacttgaagaaactcag
atgatcgtgacaacaccagaaaaatgggatgtcattactcgcaaaagcagcgacatgtca
ttgtcaatgctagtaaaactcttgattattgacgaagtgcatcttctgaatgatgataga
ggtgcagtgatagaggcattagttgctcggaccctccgtcaggttgagtcaacgcagaca
atgataagaattgtaggcctgtcagccactttacctagctacctacaggttgctcagttt
ctacgagtgaacgcagacactggccttttctattttgattcgagctatcgcccagttccc
ttagctcagcagtatataggcatcaccgagcataactttgctgccaaaaatgcattgtta
aatgagatatgctacaaaaaggttgctgattcagttagacaaggtcatcaagcaatgatt
tttgttcattcccggaaagacacttcaaaaacagctgagaaattgattgatcttgctcgg
gaaaatgaaactctggatttgttcacgaatgagactcatcctcaatttcacataagaaag
aaagaagtcatcaagtccagaaataaggatcttgtcaaattttttgaagctggtttcggt
attcatcatgctgggatgttacgatctgatagaacacttacggagaggctgttttccgat
ggactcttgaaggtgcttgtttgcactgcaactcttgcttggggtgttaatctgcctgca
cacacagtcttaattaagggaacacaactgtatgatgccaaggctggtgggtggaaagac
ttgggaatgcttgatgtcatgcagatctttggaagagctgggagaccgcagtttgacaag
agtggtgagggaattattatcacatctcatgacaagctggcttactatcttcggctgctg
acgagtcagcttcccatagaaagtcagttcataagttccttgaaagacaatttaaacgca
gaagtcgtattgggaactgtgactaatgttaaggaagcttgtgcgtggcttggatataca
tatttgtcaattcggatgaagttaaatcctttggcatatggcattggatgggacgagata
attgccgatccttctttaacgttgaagcaacgggcccttgtggctgaggctgcacgttca
ctggacaaagctaaaatgatgaggtttgatgagaaaagtggaaacttttactgtactgag
cttggacgggttgcaagtcacttctatattcagtactctagtgttgaaacatacaacgaa
atgttgaagcggcacatgaatgaaagcgagataattgatatggttgcccattcttctgaa
tttgaaaatattgtggtaagagaggaagagcagcacgaacttgagactcttgcacgctct
tgctgtcccttagaagttaagggaggcccttcaaacaaacatgggaaaatttcgattctc
attcagttgtacatatctcgtgggtcaattgatgcattttctctggtctctgatgcttca
tatattagtgctagtttagcacgtataatgcgtgccctatttgagacatgtttgcgaaaa
ggctggtgtgagatgactttatttatgttggaatactgcaaggcagttgatcgtcaactg
tggcctcatcaacatcctcttcggcaattcgatagggatataccttttgatacattgaga
aaacttgaagagcgaggggccgacttagaccgcttgtatgagatggaggaaaaagacatt
ggagcactaattcgttacaatcctgggggaaggttggtcaagcaacatctagcatatttt
ccgtctattcaactgacagctactgttagtcctatcacccgcactgtgttgaaggtggat
ttgcttataactccagattttatatggaaggatcgctttcatggtgctgctcttcgttgg
tggattctcattgaggacacagagaatgattatatctaccactcggatctttttacacta
acgaagcggatggctagaggggaaccgcagaagctttcttttactgtgcctatttttgaa
ccacatccgccgcaatactatgttcatgctatatctgattcctggttgcatgcagagtct
ttctacacaatctctttccacaatcttgcactaccagaggcacgtacgtctcacacggag
cttctagacttgaaacctcttcctgtgacttctcttgggaataggttgtatgaatcgctt
tacaaattttcacatttcaatccaatacagactcagattttccatgtcttatatcacaca
gacaacaatgttcttgtgggagctccaactggaagtgggaaaactatatctgctgaactt
gcaatgttacgtctcttcagtacccagcctgatatgaaggtatgagttctcacaccacta
aaagccattgttcgagaaagaatgaaagattggaaaaagcatcttgttgctccacttgga
aaagaaatggttgaaatgactggagattacactccagatttagttgctctcttgtctgct
gatatcatcatatctaccccagaaaaatgggacggcattagtcgtaattggcatactcga
agttatgtaaaaaaggtcggccttgttattttggatgagattcacttgctaggtgccgac
agaggacccatccttgaggttattgtatctagaatgaggtacatatcatcacaaacagag
cgctctgttcggttcgttggtctttctactgctctggcaaatgcaggtgatttggctgac
tggttgggtgttggggagatcggactgttcaattttaaacctagtgttagacctgtaccg
attgaagttcatattcagggttatcccggaaagtattactgcccaaggatgaatagcatg
aacaagccagcatatgcagccatatgtacccactcacctacaaaacctgttcttatcttt
gtttcatcgcgaagacagacaaggcttaccgcgctggatcttattcagtttgcggcatca
gacgagcatccgcggcagtttctgagtgtgtcagaggaagacttgcagatggtcctctct
cagatcactgaccagaatctccgacatacgttgcaatttggcattgggttgcatcatgca
ggtttgaatgaccaggatagatctgtagtggaagagctttttgtgaacaacaagattcag
gttttggtctcaacaagtacattggcatggngagtgaacctaccagctcacttagttatt
ataaagggaacagaatacttcgacggaaaaaccaaaagatatgttgactttccccttaca
gaaatcttgcaaatgatggggcgtgcaggacgtccacagtttgatcaacatgggaaagcg
gttattcttgtacatgaacctaaaaaaagcttctacaagaagttcttgtacgaaccattc
ccggtagaaagtagcctgaaagagaggttgcacgatcacttcaatgcagaaatagtctct
gggacgattggcaacaaagaagacgctgtgcactatcttacatggacgtatttgtttcgt
agactgatggctaatcctgcttactatgggctagaaggtactcaagatgaatcagtgtgt
tcctacttatcaagattggtgcaagacacgtttgatgatcttgaagacagtggatgcctc
aaagttacagaagatagtgtagagcctatgatgctgggtacaatagcatcgcagtactac
cttagctacatgaccgtgtctatgtttggttctaatataggccccgacacgtcgctcgaa
gcatttttgcatnttttggcgggagcgtctgagtatgatgaacttcctgtgcggcacaat
gaggaaatttacaacaaaacactgtcagagaaagttcggtatcgagtggataataaccat
ctagatgatcctcatacgaaggcaaatctgctcttccaggcacatttttctcagctggca
cttccaataactgattataacacggatctgaagtcagtcttggaccaaagcattcgaatc
ctccaggccatgattgatatatgcgcaaacagtggatggctcacaagctctctgacgtgc
atgcgtctcctgcaaatggttatgcagggcatgtggtcggatcaagattcgtcattatgg
atgattccatgcatgaacgaggaccttctgggatctctaaccgcaagaggaatccacacg
ctgcatcagctattagagcttcctagggaaagtcttaaaactgttaccggaaacttctct
gcccccaagttatcccaggatctccagcgattcccgcgtatacaaatgaatgtgagactc
caaaggaaggactctgacaggccttcgacgctggagattagacttgagaagatatcaaag
aggaatagctcgagggcgttggctcctcgtttcccaaaggtgaaagacgaagcgtggtgg
ttggtacttggtgatacttcaacgtctgaactctttgctgtgaagagagtttcgttcact
ggtcgtctgatcacacggatggagttacctcccaacataacctctcttcaggatactaaa
ctatttttagtttcggattgttatctgggatttgagcaagagcactccattgaacaacga
cctgcccgacgctaa
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integrated database retrieval system
