Raphanus sativus (radish): 130503815
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Entry
130503815 CDS
T06014
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
130503815
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
130503815
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
130503815
NCBI-ProteinID:
XP_056854357
UniProt:
A0A9W3CRV7
LinkDB
All DBs
Position
Unknown
AA seq
406 aa
AA seq
DB search
MQMKKLLISIVSFLLYAPLIFSSPVPDPEAIVEEVHKSINASVAARRKLGYLSCTTGNPI
DDCWRCDPHWESHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDDPVTPKPGTLRHAVV
QDEPLWIIFQRDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGVHIH
DCKQGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIMGSTAI
TLSNNYMTHHDKVMLLGHSDTYTRDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWEMYAIGGSANPTINSQGNRFVAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNG
AFFTKSGGAASSSYAKASSLGAKPSSLVGPLTVGSGALNCRKGSRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcagatgaagaagctcttaatctccatagtctcatttcttctctatgctccattgatc
ttctcttcaccagttccagacccagaagccatcgtcgaagaagttcacaagagcatcaac
gcgtccgtcgcagcacggaggaagctaggctacctctcctgcacaaccggcaacccaatc
gacgactgctggcgatgcgacccacactgggagagccaccgccaacgcctcgccgactgc
gccatcggtttcggcaaaaacgccatcggcggccgagacggccgcatctacgtcgtcacc
gactcgggaaacgacgacccggtgacccccaagcccggaactttaagacacgccgtggtc
caagacgagcctctctggatcatcttccagcgggacatgaccatccgcctcaaagaagag
ctcatcatgaactctttcaagaccatcgatggccgcggcgcctccgtgcacatcgccggc
gggccatgcatcacgatccagtacgtgaccaacgtcatcatccacggggttcacatccac
gactgcaagcagggcgggaacgcgatggtgcggagctcgccgaggcattatgggtggagg
acggtgtctgacggtgacggtgtgtccatcttcggaggaagtcatgtctgggttgatcac
tgttcgttgtctaactgtgaagatgggcttattgatgcgataatgggctcgacggcgatt
actttgtctaataattacatgacgcatcatgataaggtcatgttgcttggtcatagtgat
acttacactcgtgacaagaacatgcagattactattgcttttaaccattttggtgaaggg
cttgttcaaagaatgccaaggtgtagacatgggtacttccatgtggtgaacaatgactac
acacattgggagatgtatgcgattggtgggagtgctaatcctactatcaatagtcaaggg
aatagatttgtggctcccaatatcagattcagcaaagaagtgactaagcacgaggatgcg
ccggagagcgagtggaagaggtggaactggaggtcatctggtgatttgttgctaaacggt
gcgttttttactaagtctggtggtgctgcgtcgtctagctatgccaaggcctcgagtctt
ggggctaagccatcttctctggttggaccgttgacggtgggttctggtgcactgaattgc
cgtaagggttctcgttgctga
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