Raphanus sativus (radish): 130505031
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Entry
130505031 CDS
T06014
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130505031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsz03400
]
130505031
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130505031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ApoL
Motif
Other DBs
NCBI-GeneID:
130505031
NCBI-ProteinID:
XP_056855616
UniProt:
A0A9W3CVS2
LinkDB
All DBs
Position
Unknown
AA seq
931 aa
AA seq
DB search
MEGNFDEPNKLPELKLDAKQAQGFLSFFKTLPNDSRAVRFFDRKDYYTAHGENSVFIAQT
YYHTTTALRQIGSGANALSSVSISKNMFETIVRDLLLERNDHTVELYEGSGSNWRLVKAG
SPGNIGSFEDVLFANNEMQDTPVVVSLFPSFQEGRCVVGMAYVDLTRRVLGLAEFIDDSR
FTNLESSLVAIGAKECIFPAESGKTNECKSLRESLERCGVMTTERSRQEFKGRDLESDLK
RLVKGNIEPVRDLISGFELATPALGALLSFSELLSDEGNYGNFAIRRYDIGGFMRLDSAA
MRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEITMRLDIVQCF
VEEAGLRQDLRQHLKRISDVERLVRSLERRRGGLQHVIKLYQSAIRLPFIKTSLHQYTGE
FSSLISKRYVKRLEALSDADHLGKFIDLVEYSVDLDQLENGEYMISSSYDTTLSSLKDQK
ESLEQQIHELHKKTAIELDLPVDKALKLDKAAQFGHVFRITKKEEPKIRKKLTTQFMVLE
TRKDGVKFTNTKLKKLGDQYQSVVDEYKSCQKELVDRVVQIVASFSEVFEELAGMLSEMD
VLLSFADLAASCPTPYCRPEITSSDVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTFIRQVGVTVLMAQVGSFVPCDKASVSIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKKAPTLFATH
FHELTALAQANSEVAGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFA
NFPESVVALAREKAAELEDFSPREESGKRKSREDDPEEISRGTARAHKFLKEFAEIPVDK
MELKDSLKRLCELKDELEKDAVDCHWLKQVL
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggagggtaacttcgacgagccgaacaagcttccggagcttaaactcgatgctaagcag
gcgcaagggtttctctccttcttcaaaaccctaccaaatgactcgagagctgttaggttc
tttgatcgcaaggattattatacagctcatggagagaactcagttttcatcgcacagact
tattaccacacaaccactgctctacgtcagattgggagtggagcaaacgctctttcgagc
gtcagcatcagtaagaacatgttcgaaacgatcgttagggatcttctcctggagcggaat
gatcataccgtggagctttacgaaggaagcgggtcgaattggaggcttgtgaaagcaggt
tctcctggaaacattgggagctttgaagatgttctgtttgcgaacaacgagatgcaggac
acgcctgttgttgtctccttgtttccgagttttcaggaggggagatgcgttgttgggatg
gcttatgttgatctcaccaggcgggttcttggactagctgagtttattgatgatagtcgt
ttcactaacctggagtcttctctcgttgctataggtgcaaaagagtgcatctttccagct
gagtctggcaaaactaatgagtgcaaaagtttgcgtgagtctctggagaggtgtggtgtg
atgacaacagagagaagtcgtcaggagtttaaaggaagagacttagaatcagatctaaag
agattggtgaaggggaatattgaacctgttagagatttgatctctgggtttgagcttgcc
acccctgctctaggtgcattactctcgttctctgaacttctttcggacgagggtaactat
gggaacttcgcaatacgcagatatgatatcggcggattcatgaggctcgactctgcagct
atgagggcgttgaatgtgatggagagcaaaactgatgcaaacaagaacttcagtttgttt
ggtctcatgaacagaacatgtaccgcagggatggggaagagactgcttcatatgtggctc
aagcaacctcttgtggatttgaatgagattacgatgagactagatatagttcagtgcttt
gttgaagaagctgggttaaggcaagatcttagacagcatctgaagcgtatctcagatgtt
gagaggcttgtccggagtctcgagagaagaagaggcggtttacagcacgttatcaaactc
tatcagtcagctataaggcttcccttcatcaaaacatcactgcatcagtacactggagaa
ttctcatcactcatcagcaagagatacgtgaaaaggcttgaggctttatcagacgcagat
cacctcggcaagttcattgatctggtagagtactctgtagatcttgaccagctagagaac
ggagagtacatgatctcctcaagctacgacaccacgttatcatctctcaaagatcagaaa
gagtcgctggagcagcagatacacgaactgcacaaaaagacagctatagaactcgatctt
ccggtggacaaggccttgaaacttgacaaagcagcgcaattcggacatgtgttcaggatc
acgaagaaggaagagccgaagatcaggaagaagctgacgacacagttcatggtgctggag
actcgcaaagacggagtgaagttcacaaacacaaagcttaagaaacttggggaccagtac
caaagtgttgtggacgaatataaaagctgtcaaaaggagctggttgatcgtgtagttcag
attgttgccagcttctccgaggtgtttgaggagctagccgggatgctctctgagatggat
gttttgctaagctttgctgatttggctgccagttgccctacaccatactgtagaccagaa
atcacctcttcggatgttggagacattgtactagaaggaagcagacatccgtgcgtagaa
gctcaagattgggtgaactttataccaaatgactgtagacttgtgagaggagagagttgg
tttcaaataataacgggacctaacatgggagggaagtccactttcattcgccaggtcggt
gtgactgtactgatggctcaagttggttcctttgttccttgcgataaagcttcagtttcc
atcagagactgtatctttgcacgtgtaggagcaggcgattgccaacttcgtggagtgtct
acttttatgcaagaaatgctagaaacagcgtcgatattaaaaggagctactgataagtca
ctgataatcatcgatgaactgggccgtggaacatcaacatatgatggttttggtttagca
tgggctatatgtgagcatctggttcaagtgaagaaagctcctactctgtttgctacccac
ttccatgaacttactgccttggctcaagcaaactctgaggttgcaggtaacaccgttggt
gttgcaaacttccatgtcagcgcacatattgacacagaaagccgcaaactcaccatgctt
tacaaggttgaaccaggggcatgtgaccagagctttgggatccatgtggctgagtttgcc
aacttccctgaaagcgtagtggcgctcgcaagggagaaagctgcagaactggaagatttc
tcccccagagaggagagtgggaagagaaagagcagagaagatgatccagaggaaatatca
agagggacagcccgagctcacaagtttctgaaagaatttgcagagataccagttgataaa
atggagctaaaagattcacttaaacgcctatgcgagttgaaagatgagttagagaaagat
gctgtggactgccactggctcaagcaggtcctctga
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