Raphanus sativus (radish): 130505170
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Entry
130505170 CDS
T06014
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E-like
KO
K07466
replication factor A1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03030
DNA replication
rsz03420
Nucleotide excision repair
rsz03430
Mismatch repair
rsz03440
Homologous recombination
rsz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130505170
03420 Nucleotide excision repair
130505170
03430 Mismatch repair
130505170
03440 Homologous recombination
130505170
03460 Fanconi anemia pathway
130505170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rsz03000
]
130505170
03032 DNA replication proteins [BR:
rsz03032
]
130505170
03400 DNA repair and recombination proteins [BR:
rsz03400
]
130505170
Transcription factors [BR:
rsz03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130505170
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130505170
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130505170
MMR (mismatch excision repair)
130505170
DSBR (double strand breaks repair)
HR (homologous recombination)
130505170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
zf-CCHC
CDC24_OB3
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
130505170
NCBI-ProteinID:
XP_056855738
UniProt:
A0A9W3CWE8
LinkDB
All DBs
Position
Unknown
AA seq
758 aa
AA seq
DB search
MGEILTGGVIEMIRNEAVKSHEDMIPVLQVTELKMFTAQTVPSKERIRVLLSDGTAFIQG
MLGITLNPLVKDGLLQAGSILRLDHFLCSEIQKKKIVVISQLEVIATNADIIGARKPNNN
DPRGGVGDSNPTSGFRSNTEIGATVLPQQRQQVYGSGSSFQLNGSRSDVSSGGRQNNNTG
TGTATSHVGQQQQRQQVYGSGSNSTLPGSYNNPSSGLVRDPPTRHQPPPPMYQNRGPVAR
NEAPPLNTPINSLNPYSGRWTIKARVTSKGDLRRFNNQRGDGKVFSFDLLDAHGGEIRVT
CFNDVADQFYDQIVFGNLYLVSRGKLRPAEKKYNHLPHDYEITLDNASTVQQCYEEDAAI
PQNLYNFRSIGDIESMETNSIIDVIGVVSSISPTGTIMRKTGTETQKRSLQLKDMSGRSV
EVTMWGSFCNAEGQKLQSLCDSGEFPVLAVKSGRVSEFNGKAVSTIGSSQLLVEPDFVEA
RKLKEWFEREGRSAPCVSISREFNGSGRVDVRKTISQIKDEKLGTSEKPDWITVNATIIY
MKVDNFYYTACPIMNGDRPCNKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQLQDHTGL
TWVTAFQEAGEEIMGMPAKDLYYVKHEHNDEQKFEDIIRKVAFTKYMFKLKVKEETYGDE
PTVKATVVKVDKVNYSSDTRVILGAIEKLRTETASSLPVRPEGSHYTADAGTSGIGTSSL
GRREFGLPANQSVQYGGGAMSCYVCGNSGHVSANCPNI
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgggggagattctgacgggaggggtaatcgagatgataagaaacgaggcggtgaagagc
cacgaggacatgataccggttctccaagtcacggagctgaagatgttcacggctcagacg
gtgccgtccaaggagaggattagggttctgctatcagacgggacggccttcattcagggg
atgctcggcatcactctcaaccctctcgtcaaagacggcctcctccaagccggttccatc
ctccgcctcgatcatttcctctgtagcgagatccaaaagaaaaagattgttgtgatttcg
caattggaagtgatagcaacgaatgctgatataattggagcaagaaagcctaataataat
gatccgcgtggtggagtaggagactctaatccaactagtgggtttaggagcaacactgag
ataggggcgactgttttacctcaacagagacaacaagtgtatggttctggttctagtttt
cagctaaatggtagtaggagtgatgtgagtagtggtggtcgtcaaaacaacaacaccggg
acagggacagcgacaagtcatgttggtcaacaacaacagagacaacaagtgtatggttct
ggttctaattctactttacctggatcatacaacaatccatcttcaggtcttgtgcgtgac
cctccaacgcgccatcaaccaccaccaccgatgtaccagaacaggggacctgtggcgagg
aacgaggcacctcctctcaacactcctatcaattcgcttaacccttattccggcaggtgg
accatcaaggctagggtcactagcaaaggagatctcaggcgtttcaacaaccagcgtggg
gatgggaaagtgttcagctttgaccttctcgacgctcatggtggagagatacgtgttact
tgtttcaacgatgtcgctgatcagttctacgaccagatcgtctttggcaatctttatctg
gtttcgagggggaaactgcgtcctgctgagaagaagtataaccatctccctcacgactac
gaaatcacgctggataacgcgtcgacggtacagcagtgctacgaggaagacgctgccatc
cctcagaacctgtacaatttccgttccattggtgatatcgaaagcatggagactaacagc
atcatcgatgtgattggcgttgtgtcgtctatcagccccactggaacgataatgaggaag
accgggaccgagacgcagaagagatctcttcagttgaaagacatgtctggtcgaagcgtt
gaggtgactatgtggggtagcttctgcaacgcggaaggacagaagctgcagagtctttgc
gactctggtgagtttcctgttcttgctgttaagtcggggagggtcagcgagtttaacggg
aaggcggtgagcaccattgggtcaagccaactcctcgttgagccagactttgttgaggct
cgtaagctgaaggaatggtttgagagagaaggaaggagcgccccttgtgtctccatttcg
agagagttcaacggtagcggcagagtagacgtacgcaaaacaatctctcaaattaaagac
gagaagctagggacctcggagaaaccagactggatcacagtcaacgccactattatatac
atgaaggttgacaacttctactacacagcttgtcccatcatgaacggtgatcgtccttgc
aataaaaaggtgacagacaacggagatgggacgtggcggtgcgagaagtgtgataaaagc
gtggatgaatgtgactacaggtacatactgcagctccagttacaggaccatacaggtctt
acttgggtcacagcgttccaagaggctggtgaggagataatgggaatgcctgctaaagat
ttgtactatgtgaagcatgaacacaatgatgagcagaagtttgaagatatcatccgtaag
gttgcttttaccaaatacatgttcaagctcaaggtaaaagaagagacatatggggatgaa
cctactgtgaaagcaacggttgtgaaagtagacaaggtgaactattcatcagataccagg
gtgattctaggtgccatagagaagctcaggacagagactgcaagttctctccctgtgagg
ccagaaggatcccattacaccgctgatgctggcacctcaggtattggaacctcatcactc
ggaagaagggaatttggtttacctgcaaaccaatcagttcaatatggtggtggtgctatg
agctgctatgtctgtgggaacagtggtcatgtttctgcaaactgtccaaacatttga
DBGET
integrated database retrieval system
