Raphanus sativus (radish): 130505473
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Entry
130505473 CDS
T06014
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 51-like
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
130505473
03009 Ribosome biogenesis [BR:
rsz03009
]
130505473
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130505473
Spliceosome [BR:
rsz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130505473
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
90S particles
Helicases
130505473
Pre-60S particles
130505473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
AAA_22
Tim54
Motif
Other DBs
NCBI-GeneID:
130505473
NCBI-ProteinID:
XP_056856063
UniProt:
A0A6J0K280
LinkDB
All DBs
Position
Unknown
AA seq
569 aa
AA seq
DB search
MADLEKNSGGELKKRMRKRNRGKKNEIQKAEVEEETHNVEENADEIKEKKVKKLQGRGKA
EDKEEEEEEEEEEEEEKMVVVAKGIMTNETFESLDLSEQTFEAIKAMDFKHMTQIQAGSI
PPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNV
AEELVRHHSLTVSMVIGGNNRRSEAQRIANGSNLLIATPGRLLDHLQHTKGFIFKHLKCL
VIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVQDLARVSLTSPVLVDVDDG
RRKVTNEGLEQGYCVVPSEKRLLLLISFLKKNLNKKIMVFFSTCKSVQFHAEIMKLINVD
SCDIHGGLDQNRRTKTFFDFMKAEKGILLCTDVAARGLDIPAVDWIIQYDPPDKPTEYIH
RVGRTARGEGAKGKALLVLIPEELQFIRYLKAAKVPVKELEFNEKKLLNVRSALEKYVAK
DYNLNKIAKEAYRAYIAAYNSHSLKDIFNVHRLDLQAVALSFCFSSPPKVHLNIESGAGK
VRKARNQQGRNGFSPYTPYGKGKSTPKAA
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttggagaagaactccggtggagagctgaagaagaggatgagaaagcgtaac
cgtggtaagaagaacgagattcaaaaggcggaagtagaagaagaaacccacaacgtagag
gaaaacgcagatgaaatcaaagagaagaaagtgaagaagctgcaggggagaggcaaagcc
gaagacaaggaagaagaagaagaagaagaagaagaagaagaagaagagaagatggtggtt
gtggcgaaagggataatgactaacgagacttttgaatcccttgacctgtctgagcagact
ttcgaagctatcaaggccatggacttcaagcacatgactcaaattcaagctggatcgatt
cctccacttctggagggcaaagatgttcttggtgctgccaggacgggttctggtaaaacc
ctcgctttcctcataccggctgttgaattgctctttaaagagcgtttctcccctcgcaac
gggactggtgtcatcgttatttgccccacaagagagcttgctattcagactaaaaatgtg
gcggaggagctagtgaggcatcattcactgactgtcagcatggttattggtggaaataac
agaaggtcggaagcacaacgtattgcgaatggttcaaatctgctgatagcaactcctggg
cgtcttcttgaccatcttcaacataccaagggcttcatctttaaacacctaaagtgcctt
gtgattgatgaagctgataggatactggaagaaaattttgaggaagacatgaataagatt
ctaaaaattctaccaaagactaggcaaacggcactattctctgccacccagacttcaaag
gttcaagatcttgctcgggtgtcattgacgtctcccgttcttgttgatgtcgatgatggt
agacgcaaggtgacgaacgaaggattggagcaaggctactgcgttgttccgagcgaaaag
agacttctccttctaatttcctttttgaagaagaacctgaataagaaaataatggtcttc
ttctcgacgtgcaagtcggtgcagttccacgccgaaatcatgaagcttatcaacgtggac
agctgtgacatccatggaggactggatcagaaccgaagaactaaaacctttttcgacttt
atgaaagcagaaaaaggtattctgttgtgtactgatgttgctgctcgtggtctcgacatt
cctgccgtggactggattatacaatatgatcctccagacaagccaacggaatatattcac
agggttggtcgaacagcccggggagaaggagcaaagggaaaggcattgcttgtcttgatc
cctgaagagcttcagtttattcgataccttaaggctgcaaaagtacctgtaaaggagctt
gagttcaatgagaagaagcttttgaatgttagatctgctctggagaagtatgttgccaag
gactataacctgaacaagatagccaaggaagcctacagagcttatatcgcagcatacaat
tcacattctctgaaagacatctttaacgttcaccggcttgatcttcaggcggttgctcta
tcgttctgcttctcatcgccgccaaaagtgcatctgaacatagaaagcggagctgggaag
gtgaggaaggcgaggaatcagcaaggtcgcaatggcttctctccttacactccctatggc
aaaggcaagtccactcccaaagcggcatga
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