Raphanus sativus (radish): 130506029
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Entry
130506029 CDS
T06014
Name
(RefSeq) squalene synthase 1-like
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00100
Steroid biosynthesis
rsz00909
Sesquiterpenoid and triterpenoid biosynthesis
rsz01100
Metabolic pathways
rsz01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
130506029
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
130506029
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
rsz01006
]
130506029
Enzymes [BR:
rsz01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
130506029
Prenyltransferases [BR:
rsz01006
]
Terpene biosynthesis
Squalene/phytoene synthase
130506029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
DUF2615
TssO
Motif
Other DBs
NCBI-GeneID:
130506029
NCBI-ProteinID:
XP_056856611
UniProt:
A0A6J0N2T0
LinkDB
All DBs
Position
Unknown
AA seq
418 aa
AA seq
DB search
MGSLGTFLRYPDDIYPLLKMKRAMEKAEKQIPPEPHWAFCYSMLHKVSRSFSLVIQQLGT
QLRNAVCVFYLVLRALDTVEDDTSIPTDEKLPILIAFHRHIYDIDWHYSCGTKEYKVLMD
QFHYVSAAFVELEKGYQEAIEEITKRMGAGMAKFICQEVETVDDYDEYCHYVAGLVGLGL
SKLFLASGSEVLTPDWEHISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRKIWGKYAA
KLEDLKYEKNSNSSVQCLNEMVSNALTHIEDCLKFMASLRDPSIFRFCAIPQIMAIGTLA
LCYNNVQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFYDFSCMLKTKVDKKDPNASKTLK
QLEDVQQLCRDNGVLHKRKSYVNDKGQSNNLYIVMLMILLAIVFAYLRANGVVSDDEQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggggagcttggggacgtttctgagataccctgatgatatatatccgctcttgaagatg
aaacgagcgatggagaaagcagagaagcagatcccacctgagcctcactgggctttctgc
tactctatgctccacaaggtctctcgaagcttctctctcgttattcagcaacttggcacc
cagcttcgtaacgctgtgtgtgtgttctacttggttcttcgagctcttgatactgttgag
gatgacactagcataccaactgatgaaaagctgcccatcctgatagccttccaccgccac
atatatgatattgactggcactattcatgtggtacgaaggagtacaaggttctaatggac
caatttcactatgtttctgcagcttttgtggaacttgaaaaagggtatcaagaggctatt
gaggaaataactaaaagaatgggtgcaggaatggccaagtttatctgccaggaggtagag
actgttgatgactatgatgagtactgccactatgttgctggacttgtgggtttgggtctg
tctaaactcttcctagcttccggatcagaagttttgaccccagactgggagcatatctcc
aactctatgggtttatttcttcagaaaacaaacattataagagattatcttgaggacatt
aatgaaataccaaagtcccgcatgttttggcctcgcaagatatggggcaaatatgctgcc
aagctcgaggacttaaagtacgagaagaactcaaatagttcagtgcagtgcttgaatgaa
atggtcagtaatgctttgacgcatatcgaagattgcctgaaattcatggcttcgttgcgt
gatccttccatatttcggttctgtgctatccctcagatcatggccattggaacacttgca
ttatgctataacaatgtgcaagtgtttagaggcgttgtgaaattgaggcgaggtcttact
gctaaagtgattgatcgcacaaagacaatggctgatgtctatggtgccttctatgatttt
tcttgcatgcttaaaacaaaggttgacaagaaggatccaaatgctagtaagacactaaaa
caactagaagacgttcagcagctctgcagagacaatggtgttcttcataagagaaagtct
tatgttaatgacaaaggacaatcaaacaatctttatattgtaatgcttatgattctactg
gctatagtctttgcatatctcagagcaaacggagtggtcagtgatgatgagcagtga
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