Raphanus sativus (radish): 130506296
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Entry
130506296 CDS
T06014
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130506296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
130506296
03036 Chromosome and associated proteins [BR:
rsz03036
]
130506296
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130506296
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130506296
PBAF complex
130506296
GBAF(ncBAF) complex
130506296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SANT_DAMP1_like
DUF7685
Motif
Other DBs
NCBI-GeneID:
130506296
NCBI-ProteinID:
XP_056856903
UniProt:
A0A9W3D0E5
LinkDB
All DBs
Position
Unknown
AA seq
683 aa
AA seq
DB search
LQALSTVPADSLLGFDTERSECDGAATAASYVISPPSIMEGEGVVKRFGDKVHVLPMHSD
WFAPNTVDRLERQVVPQYFSGKSPNHTPESYIQFRNALVSKYLDNPEKTLTISDCRGLVH
GVDAEDLARVFRFLDHWGIINYCAAPQCHPGPSRGVSDVREDTNGEVHVPSAALTSIDSL
IKFDKPICRHKADESLPCLDVDLPDWDIRIREHLCDNHCYHCSRPLPTVYFQSQKKEDVL
LCSNCFHDARFVVGHSCIDFVRVDTSKDFRDQDGENWSDQETLLLLEAVELYNENWVQIA
DHVGSKSKAQCILHFLRLPVEDGLLDNVELPGVTDPENPTNGHDHRGTDSNGALPGTSEQ
GSGTEINLPFVKSPNPVMALVAFLASAVGPRVAASCAHECLTVLSTDDRLKSDGLQGKEP
SLLDRANQQLDDNSGAQKTSCQNGAEAPTPLPQDKVMAAFRAGLSAASTKAKLFADHEER
EIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFAAERARMLSARFGST
PGGINPQANNSNNLQGMSLSTGGGGNNINTLLQQQLHQQQQVSAGSSQPSMIPGFSNNPQ
VHAQMQFMARQQQQQQQQAFSFGPRLPLNAIQTNAGSTASPNVMFGNNQVNNPAGASINQ
PSFSHPMVRSSTGSGSGSGLGLN
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggcgttgtctactgtacctgctgactctttgttggggtttgatactgagaggagt
gaatgtgatggagctgctactgcggcttcttatgttatctctccgccttctattatggaa
ggagaaggtgttgttaaacggtttggggataaagttcatgtcttgcctatgcattcagat
tggtttgcaccaaacacagttgatcgccttgaaaggcaagtggtgccacagtatttctca
ggaaaatcgccaaaccatacaccagagagttatatacagttcaggaacgcccttgtttcg
aaatatttggataacccggagaagacactgacgatttctgattgccgaggattggtacat
ggtgttgacgctgaagatcttgcaagagttttccgttttcttgatcactgggggataatc
aattactgtgccgctccccagtgtcatcctgggccttctaggggtgtatctgatgtcagg
gaggatacaaatggtgaggtccatgttccgtctgctgctttgacatctattgatagtttg
atcaagtttgacaagcccatctgtagacacaaggcagatgaatccttgccatgtttggat
gttgacctccctgattgggacatcaggattcgtgaacacttatgtgataaccattgctac
cattgttctcgaccgcttccaactgtgtacttccaatcacaaaagaaggaggatgtactc
ttatgctctaattgttttcacgatgcaagatttgttgttggacattcttgtattgacttt
gtaagagtggatacaagcaaagatttcagggaccaagatggagagaattggagtgatcaa
gaaactctcttgcttcttgaagctgtggagctctacaatgaaaactgggttcagattgcg
gaccatgtcggttccaaatcaaaagctcaatgcattcttcattttcttcggttacctgtg
gaggatggtcttttggataatgttgagcttccaggtgttactgatccggaaaaccctaca
aatggacatgaccacagaggaacagattcaaatggggctttacctggaacttcagagcaa
ggttctggcactgagatcaatcttccttttgtgaagtctccgaatccggttatggcattg
gttgcatttttggcatcagctgttggacctagagttgctgcgtcctgtgcccacgagtgc
ctcacggttctatctacggatgataggttgaaatctgatggcttgcaaggaaaagaacct
agcttgcttgatagagcaaatcagcagctagatgataactcgggagcacagaaaacatcc
tgtcaaaacggagcagaagcaccgactccactgccacaggacaaggtcatggctgctttt
agagccggtctatcagctgcatcaacaaaagcaaaattgtttgctgatcatgaggaacgc
gagattcaaaggctttctgcaaatattgtaaatcaccagttgaagaggatggagctgaag
ctaaagcagtttgcagaaatagaaacgttgttgatgaaagaatgcgaacaagtagagaag
actcgtcagagatttgccgcagaacgagcacgtatgctgtcagcaagatttggatcaaca
cctggaggaatcaatccacaggctaataatagtaataatctccaaggcatgtctctatcc
acaggtggtggtggtaacaacatcaatactctcctgcagcaacaactacatcagcaacag
caagtttcagctggctcttctcaaccaagcatgatcccagggtttagcaacaacccacaa
gttcatgcccagatgcagttcatggcacgccaacaacaacaacaacaacaacaagcgttc
tcctttgggccgagattgcctcttaatgcaatacagacgaatgcaggatcaacggcttca
ccgaatgtcatgtttggcaacaaccaagttaataaccctgcaggtgcatccatcaaccag
ccttcgtttagtcacccgatggttaggtcttccacgggttctggatccgggtctggctta
ggcttaaactaa
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