KEGG   Raphanus sativus (radish): 130506934
Entry
130506934         CDS       T06014                                 
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1-like
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03040  Spliceosome
rsz04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130506934
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    130506934
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsz03041]
    130506934
   04121 Ubiquitin system [BR:rsz04121]
    130506934
   03400 DNA repair and recombination proteins [BR:rsz03400]
    130506934
Enzymes [BR:rsz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     130506934
Spliceosome [BR:rsz03041]
 Complex B
  Other components
   Prp19 complex
    130506934
 Complex C
   Prp19-CDC5 complex
    130506934
Ubiquitin system [BR:rsz04121]
 Ubiquitin ligases (E3)
  U-box type E3
   130506934
DNA repair and recombination proteins [BR:rsz03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    130506934
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd DSE1_N ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_NOL10_N Beta-prop_EML Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_TEP1_C CFAP251_N Beta-prop_WDR19_1st WDR90_beta-prop_4th ASA1 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_SPT8 eIF2A PAC11 NBCH_WD40 Beta-prop_VPS8 Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_Nup120_160 Beta-prop_RSE1_2nd
Other DBs
NCBI-GeneID: 130506934
NCBI-ProteinID: XP_056857612
UniProt: A0A9W3D1G5
LinkDB
Position
Unknown
AA seq 281 aa
MDTTAVLFDRQSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGSSEGGNYAC
KHTLKDHTAEVRAVTVHATNKYFVSASLDSTWCFYDMSSGLCLAQVTDDSEKVDYTAAAF
HPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHTGEITSVSFSENGYFLATSALDGVRLW
DLRKLKNFRTFDFPNANSVEFDHSGSYLGIAASDIRVFQTASVKAEWNPVKTLPDLSGTG
RATCVKFGPDAKYVAVGSMDRNLRIFGLPSNDSTEDSAQDS
NT seq 846 nt   +upstreamnt  +downstreamnt
atggatacaactgccgttctctttgatcgtcagtcaggacaaatcttgtcgacgttgact
ggtcattcaaagaaggttactagtattaagtttgtaggtgacactgatcttgttttgact
gcttcatcagacaagacagttcgtatctggggaagttcagagggtgggaactatgcctgt
aaacatacattgaaagatcacactgcagaggtgcgagctgtcactgtccatgcaacgaac
aaatactttgtgtcggcatcgctcgacagtacgtggtgcttctatgatatgtcctctggt
ttgtgccttgcccaggtaacagatgattccgagaaggtggattacacggctgccgctttc
catcctgatggtctcattcttggaactggtaccgctcaatctattgtcaagatttgggat
gtaaagagtcaggcaaacgtggcgaagttcggtggccacactggtgaaatcacatctgta
tcattttctgaaaatggttatttcctcgcgacatctgcgctggatggtgttagactgtgg
gacctgcgcaagctaaagaacttccgaacattcgactttccaaatgcaaactcggtggaa
tttgaccatagcggatcttatcttggcattgctgcttcagatataagagtattccaaacg
gccagtgtaaaagccgaatggaacccagtcaagacacttcctgatctatccggtacaggt
agagcaacatgtgttaagtttggtcccgacgccaaatacgtagcagtcggttcaatggac
cgtaatctcaggatattcggtttacctagcaatgacagcactgaagactctgcacaagat
tcatga

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