Raphanus sativus (radish): 130507326
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Entry
130507326 CDS
T06014
Name
(RefSeq) DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03440
Homologous recombination
rsz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130507326
03450 Non-homologous end-joining
130507326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsz03032
]
130507326
03400 DNA repair and recombination proteins [BR:
rsz03400
]
130507326
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
130507326
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
130507326
BRCA1-C complex
130507326
NHEJ (non-homologous end-joining)
MRX complex
130507326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
SbcC_Walker_B
AAA_21
SMC_N
Rad50_zn_hook
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
130507326
NCBI-ProteinID:
XP_056858018
UniProt:
A0A9W3D2R5
LinkDB
All DBs
Position
Unknown
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGSNGAGKTTIIECLKVSCTGELPPNAR
SGHSFIHDPKVAGETETKAQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTFKLKLENLQTLKDAAYKLRESITQDQERTESSKA
QMSELENSIQKVDAEVHNKEMMLKDLRKLQDQVSRKTAERSTLFKEQQRQYAALPEENED
TIEELKEWKSKFEERIALLETKIRKMEREMDDTQTTISSLHNAKTNYMLEISKLQTEAEA
HMLLKDERDTSIQKTFSHHNLGNVPSTPFSTEVVLNLTNRIKSRLGEFEMDLVDKKKSNE
AALSTAWDCYMDANDRWKSIEAQKRAKDDIKTGISKRIEEKEIERDSFEFEISNVDVQQI
DEREKLVQVELERKSKQNSESGFESKIEQKQHEIYSMEHKIKTLNRERDVMAGDAEDRVK
LSLKKTELENLKKKHKKIIDECKDKIRGALKGRLPLEKDMKKEIVQALRSVEREYGDLSL
KSREAEKEVNMWQMKIQEVNNSLSKHHKDTESRKRYIESKLQALKQESFTIDAYPKLLDS
AKDKRDYHKSKYNMATGMRQMFEPFEQVAREHHFCPCCERTFSAQEEDNFVKKQRAKAST
TGDHVKALAAESSNADSIFQQLDNLRSVFEEYTKLTDEIIPLAEKSLQEFTEELEQKSEA
LDDVLAISAQIKSDKDSIEALVQPLENADRLFQEIASYQKQIEDLEYKLDFRGHGVKTMQ
EIQSELSSLQSTKDKLHDELQKLRDEQIYMERDISCLQARWHALREEKAKAANLLRDVTK
AEEDLERLAEEKSQLDLDVKHLSEAVGPLSKEKEQLLSVYNDMKVKRNQEYEELAEKKRN
YQQEVEALLKANSKINEYRELKKGERLNDIQEKQRAAESQLQSAESRKNEIAAELSKSKD
LMGNQDQLRRNIEDNLNYRTTKAQVEVLTGEIESLEEQILNIGGIPAVEAEISKILRERE
RLLSELNRCRGTVSVYESSISKNKVELKQTQYKDIDKRHFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYRVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAGALL
RIMEDRKGQENFQLIVITHDERFAQMIGQRQHAEKYYRVAKDDMQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagtcgataaaatgctgatcaagggtatcagaagcttcgaccctgaaaataag
aacgtcatcactttcttcaggcctctaaccctaatcgtcggttccaacggcgccggaaaa
actacgattatagagtgcttgaaggtttcttgtactggagagctgcctcctaacgcgagg
tctggtcacagcttcatccatgaccctaaggttgctggggaaacggagactaaagcacaa
attaagctgcggtttaagacagctgcagggaaggatgtggtgtgtataaggtcatttcag
ctgacacaaaaggcttcaaagatggagtacaaggccattgagagtgtgcttcagaccatt
aatcctcacactggagagaaagtatgtctcagctacagatgcgctgacatggatagggag
ataccagctttgatgggtgtatctaaagctatattagaaaacgtcatatttgtgcaccaa
gatgagtctaactggccactgcaagatccttctactttgaaaaagaagtttgatgatatt
ttctcagccaccagatacacaaaggcgttggaggttattaagaaacttcacaaagatcaa
gctcaggagataaaaacgtttaagttgaagttggaaaatctgcagacgttgaaagatgct
gcttataagcttcgtgagagcatcactcaagatcaagaaagaacagagtcttcaaaagct
cagatgtcggaactggaaaacagcattcagaaagtggatgctgaagttcataataaggaa
atgatgttaaaagatctgagaaagctacaggaccaagtttcaagaaaaacagccgaaagg
agcaccttatttaaggaacagcagagacagtatgcagcattacccgaggaaaatgaagat
actattgaagaactcaaagaatggaaaagcaagtttgaagaaaggattgcgcttttggag
accaaaattcgaaagatggagagagagatggatgacacacaaactacaatttcttctctt
cacaatgcaaaaaccaactatatgctggagattagcaagctacaaacagaagctgaagct
catatgctgctgaaggatgaaagagatacttccatccagaaaactttttcccatcacaat
ttgggaaatgttcctagtacccctttcagtactgaggtagttttgaatctcacaaatcga
ataaaatcaagactgggtgaatttgagatggacttggtggataagaagaaatcaaatgag
gctgctctaagtacggcttgggattgctatatggatgctaatgaccgttggaaaagcatc
gaagctcagaaacgagctaaagatgatatcaagacaggcatatcaaaacgcatagaagag
aaagaaattgagcgtgattcatttgaattcgaaatatccaatgtggatgttcaacaaatt
gatgaacgagaaaaacttgtgcaagttgagcttgagagaaagtcaaaacaaaattctgaa
agcggatttgaatccaaaatagaacagaaacagcatgaaatatacagcatggagcataaa
atcaagactctcaatcgagaaagagacgttatggctggtgatgctgaggatagagtgaaa
ttgtctttgaagaagacggagctggagaacctcaagaagaaacacaaaaagataatcgat
gagtgcaaggataaaattcgaggggcgctgaaggggagattgccacttgagaaggatatg
aagaaggaaatagttcaagctctaaggtcagttgaaagggaatatggtgacctgagctta
aaatcccgagaagcagaaaaggaggtgaacatgtggcagatgaagattcaagaagtaaac
aatagcctatccaagcatcacaaggatacagagtcaagaaagagatacattgagtccaag
cttcaagctttaaaacaggaatcatttaccattgacgcttatcccaaattgttagattcg
gctaaggacaaacgagactaccacaaaagcaaatataacatggcaactggtatgcgccag
atgtttgagccatttgagcaggtagcccgtgaacatcatttttgtccttgctgcgagcgc
actttttcagctcaagaagaggacaacttcgttaagaagcaaagggctaaggcttcaaca
acgggggatcatgtcaaagcattagcagcagagtcttcaaacgctgactctatctttcag
cagctggataaccttcgctcagtttttgaagagtacacgaaactaactgatgaaattatt
cctctcgccgagaaatctttgcaagaatttacagaagagctggagcagaagtccgaagcc
cttgatgatgtattggcaatctcagcgcagataaaatctgacaaagactcaattgaagca
ttggtgcagcccctggaaaatgctgataggcttttccaggaaatcgcatcctatcagaag
caaattgaagatctcgaatacaaacttgatttcaggggtcatggtgttaaaactatgcaa
gaaatccaatcagaactaagtagcctccaaagcaccaaggataaattgcacgatgagctg
cagaagttaagggatgaacagatttacatggaacgtgatatatcatgcctccaagccaga
tggcatgcacttagagaggagaaggctaaggctgccaatttgttacgtgacgtcacgaag
gcagaagaagacctagagcgtttagccgaggagaaaagtcaacttgacctagacgttaag
catttgtccgaggctgtgggccctttgtccaaggaaaaggagcagttactgagtgtttac
aatgatatgaaagttaaacgtaatcaagagtatgaagaacttgctgagaaaaagagaaac
taccaacaagaagttgaggcattgctgaaggccaattctaagattaatgagtatcgtgag
ctgaagaaaggagagcggttaaatgatattcaagaaaagcagcgggcagctgaatcccag
cttcagagcgccgaatctagaaagaatgaaattgcagctgaactgagcaaaagtaaagac
ttgatggggaatcaagatcaactgagaagaaatatagaggataacttgaactaccgtaca
acaaaagcacaggtcgaggtgcttacaggcgagattgaatcactggaagagcaaatcttg
aatattggtgggatacccgcagttgaagctgaaatttcaaagatattgcgggaaagagaa
agacttctttcagagttgaatcggtgtcgtggaacagtgtctgtttatgagagcagtatt
tcaaagaacaaagtggagctaaaacagacacaatacaaggacattgataagcggcacttt
gatcaactgatccagctaaagacaactgaaatggcaaataaggacttggatagatactac
aacgcccttgacaaagcactgatgcgcttccacacaatgaaaatggaagaaataaataag
attataagggaactgtggcagcagacatacagaggtcaagacatcgattacataagaata
cactcagattccgagggtgcaggcactcgctcttacagctacagggttcttatgcagact
ggtgatacagaacttgaaatgagaggaagatgcagtgctggtcaaaaggttcttgcttca
ttgataataaggttggcattggccgagacattttgcctaaactgtggaatattagcactt
gatgagccaactacaaacttggatggtcctaattcagaatctcttgcaggagctcttctt
aggatcatggaagacagaaagggccaagagaatttccaacttatagtcattactcacgac
gaacgctttgctcaaatgattggccaacggcaacatgctgaaaaatattaccgagtcgca
aaagatgatatgcaacacagcataatcgaggcccaagagatctttgattga
DBGET
integrated database retrieval system
