KEGG   Raphanus sativus (radish): 130508177
Entry
130508177         CDS       T06014                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03018  RNA degradation
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130508177
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130508177
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    130508177
   03041 Spliceosome [BR:rsz03041]
    130508177
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     130508177
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     130508177
Spliceosome [BR:rsz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    130508177
 Complex C
  U2 snRNP components
    130508177
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF1256
Other DBs
NCBI-GeneID: 130508177
NCBI-ProteinID: XP_056859457
UniProt: A0A6J0NC02
LinkDB
Position
1:complement(1710991..1712325)
AA seq 93 aa
MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVDLLHDAARREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttctcgtacttcaaggatttggtgggacaagaagtgacggttgagctgaag
aacgatttagcaatcagagggacacttcattctgtggatcagtaccttaatatcaagctc
gagaacactcgtgttgttgatcaggacaagtaccctcacatgctgtcggtgagaaactgt
ttcatcagaggatcagtggtgaggtacgtgcagctacctcctgatggagtcgatgttgat
ttacttcacgatgcagctagaagagaggccagaggtggatga

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