Raphanus sativus (radish): 130508177
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Entry
130508177 CDS
T06014
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130508177
09123 Folding, sorting and degradation
03018 RNA degradation
130508177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
130508177
03041 Spliceosome [BR:
rsz03041
]
130508177
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130508177
mRNA degradation factors
5'-3' decay
Lsm complex
130508177
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130508177
Complex C
U2 snRNP components
130508177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
DUF1256
Motif
Other DBs
NCBI-GeneID:
130508177
NCBI-ProteinID:
XP_056859457
UniProt:
A0A6J0NC02
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All DBs
Position
1:complement(1710991..1712325)
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVDLLHDAARREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttctcgtacttcaaggatttggtgggacaagaagtgacggttgagctgaag
aacgatttagcaatcagagggacacttcattctgtggatcagtaccttaatatcaagctc
gagaacactcgtgttgttgatcaggacaagtaccctcacatgctgtcggtgagaaactgt
ttcatcagaggatcagtggtgaggtacgtgcagctacctcctgatggagtcgatgttgat
ttacttcacgatgcagctagaagagaggccagaggtggatga
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