KEGG   Raphanus sativus (radish): 130509305
Entry
130509305         CDS       T06014                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 7-like
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03020  RNA polymerase
rsz03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    130509305
  09124 Replication and repair
   03420 Nucleotide excision repair
    130509305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsz03021]
    130509305
   03019 Messenger RNA biogenesis [BR:rsz03019]
    130509305
   03400 DNA repair and recombination proteins [BR:rsz03400]
    130509305
Transcription machinery [BR:rsz03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     130509305
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     130509305
DNA repair and recombination proteins [BR:rsz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      130509305
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 130509305
NCBI-ProteinID: XP_056861101
UniProt: A0A9W3DB78
LinkDB
Position
3:23261433..23262946
AA seq 174 aa
MFFHIVLERNMQLHPRFFGQNLRENLVSNLVKDVEGTNSGRHGFVLAVTGIESIGKGLIR
DGTCFVTFPVKYRCVVSKPFKGEVLEAVVTKVMQHGFFAEAGPLQLFVSNHEMEDCMEYQ
AGDMPNYTSSDGSVRIQKECEVLLKITAVSVVASEIFCLGSIKGEFLGLLNVRA
NT seq 525 nt   +upstreamnt  +downstreamnt
atgttcttccacatagttttggaacggaacatgcagttacatccacgcttctttggtcag
aaccttcgtgaaaacctcgtctctaacctcgtgaaagatgttgagggcactaacagtggc
cgacatgggtttgtactagcggtaactggaatagaaagcataggaaaaggattgatccga
gacgggacttgtttcgtcaccttccctgttaagtaccgatgcgttgtttccaaacctttc
aaaggcgaggttttggaagctgttgtaactaaggtcatgcagcacggattcttcgccgaa
gctggccctcttcagctttttgtctccaatcatgagatggaagattgtatggagtatcag
gctggtgacatgcctaattacacatcatcagatggatcagttagaatccagaaagaatgt
gaagtgttactaaagatcactgccgtcagtgtcgttgcctctgaaatcttctgtttgggt
agcatcaaaggagaatttttggggctcctaaacgttcgtgcataa

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