Raphanus sativus (radish): 130509455
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Entry
130509455 CDS
T06014
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03030
DNA replication
rsz03410
Base excision repair
rsz03420
Nucleotide excision repair
rsz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130509455
03410 Base excision repair
130509455
03420 Nucleotide excision repair
130509455
03430 Mismatch repair
130509455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsz03032
]
130509455
03400 DNA repair and recombination proteins [BR:
rsz03400
]
130509455
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130509455
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130509455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA_lid_RFC1
AAA
PTCB-BRCT
AAA_22
RCF1-5-like_lid
AAA_30
AAA_19
AAA_18
Rad17
AAA_assoc_2
RuvB_N
nSTAND3
DNAX_ATPase_lid
AAA_14
Sigma54_activ_2
AAA_5
AAA_17
Zeta_toxin
NTPase_1
BRCT_2
AAA_28
Myosin_head
Gp44_lid
Motif
Other DBs
NCBI-GeneID:
130509455
NCBI-ProteinID:
XP_056861435
UniProt:
A0A9W3DC15
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All DBs
Position
3:23869383..23876270
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AA seq
942 aa
AA seq
DB search
MSNIRKWFVKPHDDKGNGNTAEETAPLRSQQASEDLETAARRKTSNYFAKEKAKAKEVEP
LPAKRKLETDSDDLGKPRPREDIEVDGDDFEVPSSRKTRDSIPSKKLKSGSGRGIPSKTV
VNDEDDDDGEDAQGKDTLKSGGRGRGGRAASGGSTGGRGGRGGGRGGFMNFGERKDPPHK
GQKEVPEGSPDCLAGLTLVISGTLDSLEREEAEDLIKRHGGRVTGAVSKKTTYLLCDEDI
GGRKSEKAKELGTKFLTEDGLFDMIRSSKPVQKSMPERTNKGTEKVSAQPKKSPQKEETR
GKPLAKISPNKVPPRPSPAKGLKKIVQSSLPWTEKYRPKLPNEIVGNQSMVTELHNWLSH
WHDQSRDTGSNFFFSISKGKGKKYNDAGVKKAVLLSGTPGIGKTTSAKLVSQMLGFQAIE
VNASDSRGKANSNIAKGIGGSIANTVKELVNNEALASNIVRSKHPKTVLIMDEVDGMSAG
DRGGVADLIASIKISKIPIICICNDRYSQKVKSLANYCLPLNFRKPTKQQIAKRLTHIAK
AEGLEVNDIALEELAERVNGDIRLALNQLQYMSLSMSVIKYDDIRQRLLSSAKDEDISPF
TAVDKLFGYNGGKLRMDERIDLSMSDFDLVPLLIQENYLNYRPSSAGKDEAKRMELLSRA
AESIADGDIINVQIRRHRQWQLSLSCCVASSILPASLLHGSREVLEQGEHSFNRFSGWLG
KNSTAGRNTRLMEDLHVHVLASRESSSGRETLRVDYLPLLLNRLTSPLQTLPKDEAVSEV
VEFMNTYSISQEDYDTIVELAKFKGRANPLEGVAPAVKTALTRKYKETSKTRMVRAADMV
QLPGVKKAPKKRIAAMLEPTVQSLSGEDGEQVAENEEDKESDAEDSEEATNGEKLESNLK
NLNARGVRVEVDLKVSGSRKTTGRGRGKDYIIELQGSELKWI
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatattagaaagtggtttgtgaaaccccatgatgacaagggtaatggaaatact
gcggaggagactgcacccttaagatctcagcaggctagtgaagacctggaaactgctgct
aggagaaaaacgagcaattattttgctaaagaaaaagcaaaagctaaagaggtggaacca
cttcctgccaagaggaaacttgagactgattctgatgatttaggcaagccccgtccaaga
gaggatattgaggtggatggtgatgattttgaggtgcctagttcgaggaagactcgtgat
agcattcccagcaagaaactaaagtctgggtcaggtagaggaatcccaagtaaaactgtt
gttaatgacgaggatgatgatgatggtgaagatgcccagggaaaggatactcttaaatca
ggcggaagaggccgtggaggtagagctgcatcagggggctcaactggtggacgaggaggt
agaggtggagggcgaggtgggtttatgaattttggtgaaaggaaagacccacctcataaa
ggacaaaaggaagttcctgaaggcagccctgattgcttagctggattgacattggtaatt
agtggaacacttgatagtttagaaagagaagaagcagaagatctgataaaacgacatggt
ggtcgtgtcacaggcgccgttagcaagaaaacgacgtaccttttgtgtgatgaagacata
ggcggaagaaaatccgaaaaagctaaggagctgggcactaagttccttacagaggatggc
ctatttgacatgatccgttcctctaaacccgtacaaaagtctatgcctgagaggacaaac
aaaggcactgaaaaagtcagtgcacagccgaagaaaagtcctcaaaaagaagagacaaga
ggcaaacctttagcaaaaatttcgcccaacaaggttcccccacgtccttccccggcaaag
ggattaaagaaaattgtccagtcttccttgccatggacggaaaagtacagaccgaagctt
ccaaatgagattgttgggaatcagtcaatggttactgagcttcacaactggctgtcccat
tggcatgatcaatctagggatactggctcaaattttttcttttctatatcaaaaggaaag
gggaagaaatataatgatgctggtgtcaagaaggcagtacttttgagcggaacacctggt
attggaaaaacaacatcagcaaaattagttagtcagatgcttggtttccaggcaattgag
gttaatgctagtgacagtcgtggaaaggcgaactcgaatatcgccaaaggaattggtggt
agcattgcaaatactgtaaaagaacttgtcaataacgaagcccttgcttctaacattgtt
aggtcaaagcacccgaagactgttctaatcatggatgaagttgatggaatgtctgcaggc
gacagaggaggtgttgccgaccttattgctagcatcaaaatatcaaagattcctatcatt
tgcatttgtaatgaccgctacagtcagaaagtgaagagtttagcaaactactgtctgccc
ctcaatttccggaagcccacgaaacagcagattgcaaaaaggctgacgcatattgctaag
gcagaaggccttgaagttaatgatattgccctggaggaactcgctgagagagtgaatggt
gacatacggctggccctgaatcagctccagtatatgagcctgtcgatgtcagtcatcaag
tatgatgatatcaggcagcgcctgctaagcagtgcgaaggatgaagatatttcccctttc
acagctgttgacaagttgtttggttataatggtgggaagctgagaatggatgaacggatt
gacctaagcatgagtgattttgatttggttccccttcttatacaggaaaactatctcaat
tataggccaagttcagccggcaaagatgaggcgaaacgaatggagttgctttcccgtgct
gctgaatctattgcggatggagatattatcaacgtgcagattcggagacataggcaatgg
caactctctctatcttgctgtgttgcttcttctattctcccagcttccttgttgcatgga
tcaagggaggtgctcgaacagggagagcatagtttcaatagattcagtgggtggcttggc
aagaattctactgcggggagaaatacaaggttgatggaggatctgcatgttcatgtcctt
gcttcccgtgaatccagctctggaagggaaactcttcgtgttgattatcttccccttctc
ttgaatcgcttgacaagtccactgcagacactgcctaaggatgaagcagtttcagaagtt
gttgagttcatgaacacctactctataagccaggaggactacgatactattgtggagttg
gcaaaatttaagggacgtgcaaatccattggagggtgttgcacctgcagttaagaccgct
ttgactagaaaatataaagagacaagtaaaaccagaatggtacgtgctgccgacatggtg
cagcttccgggagtgaagaaggcaccaaagaagcgaatagctgcaatgcttgaaccaact
gtccaaagtttgagtggtgaagatggcgagcaggtagcagaaaatgaagaagataaagaa
tcagacgctgaagactcagaagaagcaactaatggagaaaagctggagtcgaatctgaaa
aatctgaatgcaagaggggtccgagttgaagtggatttgaaagtatcaggttcaagaaag
acaactggcagaggcagaggcaaagactatataattgagttgcagggatccgagttgaag
tggatttga
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