Raphanus sativus (radish): 130509792
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Entry
130509792 CDS
T06014
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130509792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
130509792
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130509792
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130509792
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GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
130509792
NCBI-ProteinID:
XP_056861967
UniProt:
A0A9W3DE09
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Position
1:complement(4206104..4209522)
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AA seq
585 aa
AA seq
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MSSLLNSSVNGSGSSLSEGSGRTFASSSFSGLSGAASPLFHHAAGSSVQGLHNIHGSFNV
ANSGLNGLASAGVQQPNGRFASTNLPLGLSQISYGSSHGHSGLTSRGGGLGVSPILGNMV
GGGSMGRTLSSGIGLSIPTLGSRLNLAANNASGNNGQNPMMSGILPQGSPQAFSMLGNSY
PTSGGLSQNHVQAMNGLSSNDISPFDINNDFPQLTSRPSSAGGQGQLGARLQQGLGLSPI
VQQNQEFSIQNEDFPALPGYKGSNADYPMDLHHKEQLHENSILMMQSQQLSMGRSGGFNL
GGGSYTSHRPQQQHAQAVSSSGVSFNVSDIFSSSHPSYHSQTGGPPGLGLRSMNSANSIT
GLGYDQPLQQYQHHQNSSQYRLQQMSAVGQPFRDLGLKPTMQVTTQSNPDRFGLLGLLNV
IKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFASPWSNEPSKGDPEFSVPQCYYAKNP
PPQHQGLFAKLLLETLFYVFYSMPKDEAQLYATNELYHRGWFYHKEHKLWFIRIGEPLVK
TNAYERGSYHCFDPSSFEIVQKENSVLYYEMLEKRPSLSQTLSVM
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcttacttaattcatcagtaaacggatcgggttcgagtttatccgagggttca
gggagaacgtttgcttcttcttctttctctggtctctctggggcagcttctccacttttc
catcatgctgctggttcttctgttcagggccttcataacattcatggaagctttaatgtt
gccaactctggtctaaatggtcttgcttctgctggagtccaacaaccaaatggaagattt
gcatccaccaatcttccgcttggcctctctcagatatcttacggtagctctcatggacac
tcaggactcactagtagaggaggaggacttggagtttctcccattttgggaaatatggtt
ggtggaggctcaatgggcaggactttgagctctggcataggattatctatcccgactctt
ggttctcgtctaaatttggcagcaaacaacgcatctggaaataatggacaaaacccaatg
atgagtgggatccttccacaaggatctccgcaggcattttctatgcttggaaactcctac
cctacatctggaggactttcccaaaatcatgttcaagcaatgaacggtctaagctccaac
gacatttctccgttcgatattaataatgattttcctcagctcactagccgtcccagttct
gccggcggtcaaggacaattgggggctcgattacaacaaggccttggtctcagccccata
gttcagcaaaaccaagagttcagtattcaaaatgaagattttccggcattgcctggatac
aaaggtagcaatgcggattatccaatggatttgcatcataaagaacaactccatgagaat
tcaattttaatgatgcaatctcaacagttatctatgggaaggtctggtgggtttaactta
ggtggaggatcatatacgtcacaccgtcctcaacaacaacatgctcaagctgtgagtagt
agtggagtctcctttaatgtctctgacatcttctcatcctcgcatccgtcttaccactct
cagactggtggacctcctggtcttggactaagatctatgaactctgcaaattctatcact
gggttgggttatgaccagcccctccagcaatatcagcaccatcagaactcgtcccaatac
cgcttgcagcagatgtcagctgttggccaaccttttagagatttaggattaaaaccaaca
atgcaagtgacaacacagtcaaatcctgatcgttttggcttgctcggtttgcttaatgtg
ataaagatgagcgaccctgacttgacttctttggcacttgggattgatctgacgacactt
gggttaaatctgaactcaacagaaaatcttcataagactttcgcctcgccttggtctaat
gaaccctctaaaggtgatcctgagtttagtgtaccgcagtgttactacgcaaaaaatcct
ccacctcaacatcaagggctctttgcaaagttattgctagaaacattgttttatgtattc
tatagcatgccgaaagatgaggcgcagttatacgcaacaaatgaactttaccacagaggt
tggttctaccacaaagaacacaagttgtggttcattagaatcggggaacctctcgtgaaa
acaaatgcgtatgaaagaggatcatatcactgttttgatccaagctcatttgagatcgtt
caaaaggaaaattctgttctttattacgagatgctggaaaagagaccctcactatctcaa
acactgagtgtaatgtaa
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