Raphanus sativus (radish): 130509824
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Entry
130509824 CDS
T06014
Name
(RefSeq) ATP-dependent helicase BRM
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130509824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
130509824
03036 Chromosome and associated proteins [BR:
rsz03036
]
130509824
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130509824
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
130509824
Chromatin remodeling factors
BAF complex
130509824
PBAF complex
130509824
GBAF(ncBAF) complex
130509824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
QLQ
DEAD
AAA_14
HDA2-3
Bromodomain
Viral_Hsp90
Motif
Other DBs
NCBI-GeneID:
130509824
NCBI-ProteinID:
XP_056862001
UniProt:
A0A9W3DDV5
LinkDB
All DBs
Position
3:complement(385509..389217)
Genome browser
AA seq
2162 aa
AA seq
DB search
MQSGGSGGGPTRGMGPAGRTNSTSSAASPTSSSSSVQQQQLASRQQQGRNSEANDGMFAY
HPGGVQGMMGGVNFGSSSASLQQPRRLFDSSQQQQQGSSQEGQQNFNPMQQAYLQFALQA
QQQKAQQQARMGMLGSSKDQDARMGMLNMQGAIPASNQPQASSSSNPSAEQFSRQMESGP
QQRNETKPHPQHVGTGQLMPGNISRPMQAPQGPQGVNNMGTNQLALSQQWQAMQAWARER
NIDLSHPANANQMTHILQARMAAQQKANEGNAASQSPSIPTSSQPSSGVPGENSPRPSSA
GDTSGQSGSGKVRHAISTSSLASTSSPRMMNPAANPFSAQGRDNPMYPRHLVQPTNGMPS
GNSMQTSVNETHVLDHNASTNKSLGSASLGSAEHLQMQQPRQLNAPSPKAALSGAGLLSK
SSLQSGQGTKQAQQRSGFTKQQLHVLKAQILAFRRLKKGEGSLPQELFKSIAPPPLEVQT
PLQIFPVRVHVQDRSSDKTVENQARSLESGKESQTAASSNGQIFAKEEDNGGDTEVPLAT
GQSQLFQNLGKEAASTDAVTKEEQQTDAFPVKSDQGADASTQQTPKSDSNADKGKAVASD
GGQSNVPPQTNSPQQPKDTASARKYHGPLFDFPFFTRKHDAMGSATANANNNLTLAYDIK
DLICEEGAEFFNKKRTDSLKKINGLLATNLERKRIRPDLVLRLQIEEKKLRLSALQSRVR
DEVDRQQQDIMSMPDRPYRKFVRLCERQRLEMNRQVLANQKAVREKQLKTIFQWRKKLLE
AHWSIRDARTARNRGVAKYHEKMLREFSKRPDDGRNKRMEALKNNDVERYREMLLEQQTN
IPGDAAERYNVLSSFLTQTEDYLHKLGGKITATKNQQEVEEAANAAAIAARLQGLSEEEV
RAAAACAREEVLIRNRFVEMNAPKDNSSVNKYYTLAHAVNEVVVRQPSMLQAGTLRDYQL
VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK
SELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRAKLSKVDWKYI
VIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAF
HDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPPKVSV
VLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKSSIYQAKIYRTLNNRCMELRKTCN
HPLLNYPYFNDLSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW
RRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDP
NPKNEEQAVARAHRIGQTREVKVIYMEAVVEKFSSHQKEDELRSGGSIDLEDDLAGKDRY
IGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVP
SLHEVNRMIARSEEEVELFDQMDEEFDWTEEMTSHEQVPEWLRASTREVNTTVADLSKKP
SKNMLSSNNLIVQTTGPGGERKRGRPKSKKINYKEIEDDNGGFSEDSSEERNIDSGNEEE
GDIQQFDDDELTGPLGNHQTNKDESDGENPVRGYDYPPRSGCFKKNTPRDDAVSSGSSPE
SHRSKAMASPVSSRKFGSLSALETRPGSVSKRMVDDTEDGEIAASGDSHIDLQRSGSWAH
ERDEGEEQVLQPTIKRKRSIRVRPRQTAERIDGIDMPASQPLQVDRSYRSKLRTVVDSHG
SRQEQSDSSSRLRSLPAKKVANTSKLHVSSPNSGRLNATQEDNTEAARETWDGTSPIGSS
SAGARMSHNIQKRCKTVISKLQRRIDKEGQQIVPMLTNLWKRIQTGYAAGGVNNLLELRE
IDHRLERLEYAGVMELASDVQYMLRGAMQFYGFSHEVRSEAKKVHNLFFDLLKMSFPDTD
FREARNALSFSGPTPTLVSTLSPRAAGTSQGKKQKHVYEKEPEPSSPQRPQQRENSRIRV
QIPQKETKLGGTSSHTDDSPILTHPGELVICKKKRKDREKSAPRTRTAGSSSPVSPPAMV
GRGLRSPVSGSGTRETRLAQQQRWPNQSTHPNNSGTAGDSVGWANPVKRLRTDAGKRRPS
HL
NT seq
6489 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctggaggcagtggcggaggcccgacccggggcatgggtccggctggtcggacc
aactccacatcatccgctgcgtctcccacttcttcatcatcttccgtgcagcagcagcag
ctggcgtctaggcagcagcaggggagaaactcagaggctaatgatggcatgtttgcctat
catcctggtggggttcaggggatgatgggaggtgtcaactttggttcttcgtctgcctct
ttgcagcagcctaggagattatttgactcttctcaacaacaacaacagggttcttcccaa
gagggccagcaaaattttaatccgatgcagcaagcgtatcttcagtttgctttacaggcg
cagcaacaaaaagcacagcagcaagctagaatgggaatgctgggttcatctaaggatcaa
gatgcacggatgggtatgttgaatatgcaaggcgcgatcccggcatctaatcagcctcag
gcctcctcctcgtctaatccatctgctgaacagttttctcggcagatggaatcaggtcct
caacaaaggaacgaaacaaaacctcatcctcagcatgttgggactggacaactaatgcct
ggaaatattagtaggccaatgcaggcaccacagggtccgcagggtgtcaataatatgggg
accaaccaactcgcattatcacagcagtggcaggccatgcaggcatgggcgcgcgagcgt
aatattgatctctcgcatcctgccaacgccaaccaaatgacgcacatacttcaggcaaga
atggctgcccaacagaaagctaatgaaggcaatgcggcttcacagtcaccatccattcca
acgtctagccagccatcttcaggtgttccaggtgagaactcacctcgtcccagctctgct
ggtgatacctctgggcagtcaggatcaggaaaggttagacatgcaatatctaccagctca
cttgcctcgacttccagtcccagaatgatgaaccctgctgcaaatcccttctccgcccaa
gggagagataatccaatgtatcctcgacatttagttcagcctacaaatggaatgccctct
ggaaattccatgcagacgtctgtaaatgagacacatgttttggatcacaatgcgtctaca
aataaaagtttaggttctgctagtttaggttctgctgaacatttgcaaatgcagcagcct
aggcagctgaatgcacccagtccaaaggctgctctatctggcgctggtttactcagtaaa
tcttcccttcagagtggacaggggaccaaacaagcacaacagcgatcaggatttaccaaa
caacaactccatgttctcaaagcccagatactggcatttcgtcgtttgaagaaaggagaa
ggttctttgcctcaggagctttttaaatctattgctccaccaccgcttgaagtgcagacg
ccgttgcaaatttttcctgtgagagtacatgttcaggatagatcttcagacaaaactgta
gagaaccaagcaaggtcactggagtctggcaaagagtctcagactgctgcttcatcaaat
ggacagatttttgctaaagaggaagataatggtggagatacagaagtacctttggcgaca
ggtcagagccaattatttcaaaatctggggaaagaagctgcttctactgatgcggttacg
aaagaggagcaacaaactgatgcattccctgttaagtcagaccaaggagcagatgctagt
actcaacagactcctaaaagtgattctaatgctgataagggaaaagctgttgcatctgat
ggaggccaatctaatgttccgccacaaacaaactctccccagcagcctaaggatacagcc
tctgccaggaaatatcacggaccattgtttgattttccctttttcactcgaaaacatgac
gctatgggatctgcaacagccaatgccaataacaatctcacattagcttatgatatcaaa
gacctgatctgtgaagaaggtgcggaattcttcaacaagaaaagaacagacagtttgaag
aagataaatggtctcctagcaacaaacttggaaaggaaaaggattaggccggatcttgtt
ttacggcttcagattgaagagaaaaagctcaggttatcggctcttcagtctcgtgttaga
gatgaagtggatcgacaacagcaggatataatgtccatgcctgataggccataccgtaaa
tttgtgaggctgtgcgaacgacaacgccttgaaatgaatagacaagtactggccaaccag
aaagctgttagagagaagcagctgaaaaccatttttcagtggcgtaagaaactccttgag
gctcactggtctatacgtgatgcacgcactgctcgtaacaggggggttgccaaataccat
gaaaagatgttgagagagttctcgaagagaccagatgatggccggaacaaaaggatggag
gcattgaaaaataatgatgtagaaaggtacagggagatgttgctggaacagcaaacaaat
atacctggtgatgctgctgaaagatataacgttctctcttcttttttgacccaaacggaa
gattatctccataaacttggaggtaagattactgccacaaagaatcaacaggaagtggag
gaggcagcgaatgctgcagcaattgccgcgagattgcagggtctttcagaagaagaggtc
agggcagcggctgcttgtgctcgggaagaagttctgatcagaaatagatttgtggaaatg
aatgcgccaaaagataattcatctgttaacaagtattatactctggctcatgctgtaaat
gaagtcgttgtgagacaaccgtcgatgctccaagctggaactttgcgtgattaccagctg
gttggattgcaatggatgctctccttgtacaataacaaattaaatgggatcttggctgat
gagatgggtcttggaaaaactgtgcaggtaatggcattgattgcttaccttatggagttc
aaggggaattatgggccacatctcatcatcgttcccaatgctgttctggtgaactggaag
agtgaactccatacttggctaccatctgtttcatgtatatattatgttggtacaaaggat
caacgttcaaaattgttttctcaggaggtttgcgccatgaagttcaatgtccttgtcacg
acttatgagttcattatgtatgatcgagcaaaactctcaaaagttgactggaaatatatt
gttattgacgaagcacagcggatgaaggacagagaatctgttttggcacgagatcttgac
cgttatcgctgccagaggagattacttctcactggaacacctctacagaacgatctgaaa
gagctttggtccctattgaatctcctccttcctgatgtctttgacaatcgaaaagcattt
catgattggttcgcacaaccctttcaaaaagaaggtcctgcgcataatatagaggatgac
tggctggaaactgagaaaaaggtcattgtcattcataggcttcatcaaattttagagccg
ttcatgcttagacgtcgtgttgaggatgttgaaggttcacttccccctaaggtttcggta
gtcttaagatgtagaatgtctgctatacagagtgccgtttatgattggattaaagctacg
ggaactctaagagttgatccagacgatgaaaaacttagggctcagaagagttcgatctac
caagccaagatatacagaactttaaataataggtgcatggagttgaggaaaacatgtaac
catcctttgctcaattatccatatttcaatgatctttccaaggattttctcgtgaggtca
tgtggaaaactgtggattctggatagaattcttataaagctacagaggacaggccatcgg
gtgttgctcttcagtacgatgacaaaactccttgatattttagaagagtatttgcaatgg
aggaggcttgtatacagaagaatagatgggactaccagcctagaagatcgggagtcagct
attgtggatttcaatgatcctgatactgattgttttatattcctgcttagtatacgtgca
gctggaaggggtctcaaccttcagactgctgacacagttgtgatatatgatccggatccg
aaccccaagaatgaggaacaagcagttgccagagcccatcgtattgggcagacaagggaa
gtaaaagtaatttatatggaggcagttgttgaaaagttttccagccatcaaaaggaggac
gagcttagaagtggtggttcaatagacctagaggatgacttggctgggaaggaccggtat
ataggatctattgagggtctcataaggaataatattcagcagtacaagatcgacatggct
gatgaagtcattaatgctgggcgttttgaccaaaggacgactcatgaagagcggcgtatg
actttggagactttattgcatgatgaagagagatatcaagaaaccgtccatgatgtacct
tctctccatgaggtgaacaggatgattgccagaagcgaggaggaagttgagttatttgat
caaatggatgaagagtttgactggaccgaggagatgacttctcacgagcaggtgcctgag
tggcttcgagctagtaccagagaggtgaatactaccgttgctgatttgtctaagaaaccg
tcaaagaacatgttatcaagcaataatctgatcgtgcaaactactgggcctggaggtgag
agaaaaagggggcggccaaagagcaaaaagattaactacaaggaaattgaagatgacaat
ggaggattctcagaggatagctctgaggaaaggaacattgattctgggaatgaagaagag
ggagacattcaacaatttgatgatgatgagctaactggtcctcttggtaatcaccaaacc
aacaaagacgaatctgatggagagaaccctgtccgcggttatgattatcctcctcggtct
ggttgttttaaaaaaaatactccacgggatgatgccgtttcttcaggatcttcgccagaa
agtcatagatcgaaagcgatggcttctccggtttcttcacgaaagtttggctctttgtct
gcattggaaactaggccaggttctgtctcaaaaagaatggtggatgatacagaagatggg
gaaatagcagcatcgggggattctcacatagatctccaacgatcaggaagttgggcccat
gaacgtgatgaaggagaagaacaggttttgcaacctacaataaagcgcaaacggagtatt
cgtgtaagaccccgtcaaacagcagaaagaatagacggtattgatatgcctgcatctcag
ccattgcaagtcgatcgtagctatcgatcaaaattgaggacagttgttgactcacatggt
tcaagacaagaacagagtgattcatcctcgagacttaggagtttacctgcaaagaaagta
gctaatacttccaagctgcatgtatcatcaccaaattctggtagattgaatgccacccag
gaggacaacactgaagctgctagagaaacatgggatggaactagtcctattggctcttca
agtgcaggtgcaagaatgtcccacaacatacagaaacggtgcaaaacggtaattagcaaa
ctccaaaggagaatcgacaaggaaggtcagcagattgtgcctatgctgacaaatttgtgg
aagagaattcagactgggtatgcagctggaggtgtaaataatctattggaactgcgagag
attgatcaccggttagaaaggctagagtacgcaggggttatggaactcgcatctgacgtg
cagtatatgctaaggggagcaatgcaattctatggattctcacacgaggtgagatctgaa
gcaaagaaggttcacaatctgttctttgatctgctgaagatgtcttttccggacacagat
ttccgagaagcaaggaatgctctttccttctctggtccaaccccgactttggtatccaca
ctatccccgagagcagcaggtactagtcagggtaagaagcaaaagcatgtatatgagaag
gaaccggagccaagctctcctcagagacctcaacaacgagagaattcaaggatcagagta
cagatacctcagaaagaaacaaagctcggcgggacatcaagccacaccgatgactctcca
attttaactcatccaggggaactagtaatctgcaagaagaagaggaaagacagagaaaag
tctgcgccaagaacaagaaccgctggctcaagcagcccggtctcacctccagctatggta
ggtcgtggtcttagaagtcctgtgtctggttcaggtacaagggagacaaggctagctcag
cagcaacgatggccaaaccaaagcacacatccaaacaacagcggtacggctggtgattca
gtgggatgggctaatccggtgaagaggttaagaaccgatgctggtaaaagaaggccgagc
catttgtaa
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integrated database retrieval system
