Raphanus sativus (radish): 130509837
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Entry
130509837 CDS
T06014
Name
(RefSeq) rhamnogalacturonate lyase B-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
130509837
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
130509837
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
PhoLip_ATPase_N
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
130509837
NCBI-ProteinID:
XP_056862065
UniProt:
A0A9W3DE05
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Position
1:4301605..4305381
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AA seq
695 aa
AA seq
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MYMLSSHVYQLMTTIGYRRHLLRQGGWVVALIMFLSLFETAISQNQSSDPEATQVLQLHY
QDGHVVVDNGIFQLILSNPEGFVTGVRYNGIENVLDYTGNEHDRGYWDLVWNFPGKKIKK
SKGTLDRIEATKMEVITQNDDKIELSFSRTWNASLTTALPVNIDKRFVMLPNSSGFYSYA
IFERLKGWPAVELDNIRLVFKLNQDKFHYMAISDERQRYMPLPEDRIPPRGKSLDYPEAV
QLLDPIEPELKGEVDDKYEYSMESKDIKVHGWISTNDSVGFWQITPSNEFRSAGPLKQFL
GSHVGPTNLAVFHSTHYVGAELIMSFEEGEAWKKVFGPVFIYLNSFPKGVDPLLLWNQAK
NQTKIEEEKWPYKFTASTDFPSSDQRGSVTGRLLVRDRYISSEDIPANGSYVGLAAPGDV
GSWQREYKSYQFWSKADEKGYFSINNVRTGRYNLYAFVPGFIGDYHNATVFDISPGTNIS
LGDLVYEPPRDGVTLWEIGVPDRTAAEFYIPDPNPTFTNKLYLNRSDKYRQYGLWERYAE
LYPDKDMVYNVDVDDYSKNWFYMQVTRKQPNGGYNGTTWEIKFKLDDKMKNFTGNFKLRI
ALATSNVAEMQVRVNDVSVKNPPLFTTGEIGKDNTIARHGIHGLYWLYSVDVPGASLRHG
NNSIYLTQPLAKSPFQGLMYDYIRLEYPDSISHLT
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtatatgttgtcttcacatgtttaccagctcatgaccaccataggttaccggagacac
ttattgagacagggaggatgggtcgttgctttgatcatgttcttgtctttgtttgaaact
gcaatctcccaaaaccaaagttctgatccagaagcaacacaagtcttgcagttacattac
caagatggacatgtggtggtggacaatggaatttttcaattaattttgtcaaatcctgag
ggatttgtaaccggagtccggtacaatggtatagaaaatgttcttgactacaccggcaat
gaacatgatagaggttactgggacttagtgtggaattttccagggaaaaaaattaagaag
tccaaaggcacattagaccggattgaagcaacaaagatggaagtgataacgcagaacgat
gataagatagagctatcgttttcaaggacttggaatgcttctttaacgacggctcttcct
gtgaatatagacaagaggtttgtaatgctgccgaactcgtcggggttctacagttacgcc
atcttcgagaggctaaaagggtggcctgctgttgagctcgataatattcgattagtattt
aagctaaaccaggacaagtttcattacatggcgatttcagatgagaggcaaaggtacatg
cctctaccagaagatcggattcctcctcgaggtaaatctcttgattatccagaggctgtt
cagcttcttgaccctatcgagcccgagcttaaaggagaggtggatgataagtatgaatac
tcaatggagagtaaagacataaaagttcatggatggataagcacgaatgactctgttggt
ttctggcaaatcactcccagcaacgagtttcgttctgctggtcctctcaagcagtttcta
ggctcccatgtcggtccaaccaacctcgcggtattccacagcactcactatgttggagca
gaactaatcatgagctttgaagaaggtgaagcatggaagaaagtgtttggacctgtcttt
atttatcttaactctttccctaaaggagttgatcctctcttgctttggaatcaagccaag
aaccagacaaagattgaagaagagaaatggccttataaattcacagcgtcaactgacttc
ccttcatctgaccaaagaggatctgttaccggcagattacttgttcgagaccgatacata
agcagtgaggatatacctgcgaatggttcctacgttggtttagctgcaccaggagatgtt
ggttcatggcaaagagaatacaaaagctatcagttctggtcaaaggccgacgagaaagga
tacttttctatcaacaatgtgagaaccggtcgttacaatctctatgcatttgttcctgga
ttcatcggtgattaccacaacgcaaccgttttcgacatctctccaggtacgaatattagc
ctaggcgacttggtgtatgagcctccaagagacggtgtaactctatgggagatcggtgta
ccagaccgaaccgctgcagagttctacattcctgatcctaacccgacgtttacaaacaaa
ctataccttaaccgttctgataagtacagacaatatggattatgggaacggtatgcagaa
ctgtaccctgataaagatatggtttacaatgtcgatgttgatgactactctaaaaactgg
ttctacatgcaagttacaaggaagcaaccaaatggaggatacaacggtactacatgggaa
atcaaatttaaactcgacgataaaatgaaaaacttcactggaaatttcaaactaagaatc
gctctagccacatcaaacgtagcagaaatgcaggttcgtgtgaacgatgtttctgtgaag
aatccaccattgtttacgacgggggaaataggaaaagataatacgatcgcaagacatggt
atacatggactctattggctatacagtgtggatgtgcctggtgcttctcttcgccatgga
aataactccatatatctaacccaaccgcttgccaaaagcccttttcaaggactcatgtac
gactatattcgtctcgagtatcctgattccatcagtcacctcacttag
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