Raphanus sativus (radish): 130509940
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Entry
130509940 CDS
T06014
Name
(RefSeq) nuclear pore complex protein NUP98A-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130509940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
130509940
03036 Chromosome and associated proteins [BR:
rsz03036
]
130509940
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130509940
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
130509940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
130509940
NCBI-ProteinID:
XP_056862241
UniProt:
A0A9W3DEJ0
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Position
1:complement(4524537..4530611)
Genome browser
AA seq
1050 aa
AA seq
DB search
MFGSSNPFGQSSGTSPFGSQSQSMFGQTSNSSSSNPFAPATPFGGTSAPFGAQTGGSIFG
GTSTGVFGAPQASSPFGSTQTFGASSSPAFGNSTPAFGASPASSPFGGSSAFGQKPLGFS
TPQSNPFGSTTQQSQPAFGNSTFGSSTPFGAMSTPAFGASSTPSFGATSTPSFGASSTPA
FGATNTPAFGSNQPAFGATNTPAFGASPTPAFGSTGTTFGNTGFGASSTPAFGASATPAF
GASGAPAFGSSSTPAFGASSSPAFGASTTPTFGSSNTSSFSFGSSPAFGQSTSAFGSSAF
GSTPSPFGAQGAQASTPTFGSSGFGQSPFGGQQQGGSRAVPYAPTVEAETASGTPAGKLE
SISAMQAYKDKSHEELRWEDYQRGDKGGPLPAGQSAGNTGFGVSNAQPNPFSPSPAFGQT
PANPTNPFSGSTSTNPFAPQTPSIASSGFGTATSNFGSSPFGVTSSSNLFGSTSSTTTSV
FGSSSAFGTPTSSPLFGSSSTPGFGSSPSIFGSTPVQGANPAFGNTQSSNLFSSNPSLGQ
TGSAFGQTGSTFGQTGSTFGQTGSAFGQTGSAFGQFGQSSAPAFGQTNIFNKPSTGFGNL
FSSSSTLTTSSSSPFGQTMAAGMTPFQSSQPGQASNGFGFNNFGQTQAANATGNAGGLGF
FGQGNFGQTPAQPSSVVLQPVVVTNPFGTLPAMPQISINQSGTSPSIQYGISSMPVVDKP
VPVRISSLLTSRHLLQKRARLPARKYRPGDNGPKVPFFADDEENSSSTPKADALFIPREN
PRALVIRPVQQWSSRVKSTIPKDRPSAPPHENGKSSEIATDAANNQNDNGEIGSAEERTH
PFVNGNQKTNGTTSTYHAGEKDLPSRTLGGHRAGKAEVVYENGADIDSLMPKLRQSDYFT
EPSIRELAAKERADPGYCRRVRDFVVGRHGYGSIKFMGETDVRRLDLESVVQFNNREVIV
YLDESKKPAVGQGLNKPAEVTLLNIKCIDKKTGKQFTEGERVEKYKTMLKRKAEAQGAEF
VSFDPVKGEWKFRVKHFSAYKLDDEDDDEA
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgtttggctcatctaatccttttggacagtcatctggtaccagcccatttgggtcccaa
tcccaatctatgtttggccagaccagtaattctagtagtagtaatcccttcgctccagca
acaccgttcggtggtacgtctgcaccttttggtgcgcagacagggggttcaatatttggt
ggcacttcaactggtgtttttggtgcacctcaagcctcctctccgtttggctccacccaa
acttttggagcttcttcgtcaccagcttttgggaattccactccggcttttggagcatct
cctgcgtcttcaccttttggtgggtcttctgcttttgggcagaaacctctgggattctct
acgcctcagtcaaatccttttggaagcacaacgcagcaatcgcaacctgcatttggaaac
agtacttttggttcgtccacaccttttggtgccatgagcacgcctgccttcggtgcatca
agcacgccttcctttggggctacaagcacaccctcgtttggtgcatcaagcacgcctgcc
tttggtgccacaaacacgcctgcgtttggctcaaaccagcctgcttttggcgccacaaac
acacctgcatttggagcttcaccgactccagcctttggtagcactggtaccacgtttggc
aacactggctttggagcttctagcacccctgcttttggtgcatcagccactcctgctttt
ggtgcatcaggcgctcctgcatttggttcatcaagtactcctgcctttggggcatccagt
tctcctgcctttggagcatctactactcctacttttggttcatcaaacacctcatccttt
agttttggctcctctccagcttttggccagtccacatcagcgtttggcagcagtgcattt
ggctctacaccatctccgtttggagcccaaggtgcgcaggcttcaaccccaacatttggg
agttctggttttggtcaatcacctttcggtggtcaacaacaagggggcagtcgagccgtg
ccttatgcaccaacagttgaggcagagacagccagtggtacgcctgctggaaagttagaa
tctatttctgccatgcaggcatacaaagataaaagtcatgaggagctaaggtgggaagac
taccagcgaggagataaaggtggaccgcttcctgctggccagtctgctggaaatactgga
tttggtgtatcaaatgctcagccaaatcctttttctccatccccggcgtttggtcagaca
ccagcaaatccaacaaaccctttttcgggctcaacgtctactaatccttttgcccctcaa
accccatcaattgctagttcaggttttggaacggctacctcaaattttggttcctcgccc
tttggtgtaacatcttcatccaatctttttgggtcaacttcatcaactaccacatccgtc
tttggatcatcctccgcttttggaacaccgacctcatcaccgttatttggttcgtcgagc
actcctggatttggttcttctccatcaatatttggttcaactcctgttcagggggcaaat
ccagcatttgggaacactcagtcatctaatctgttcagctcaaacccctcccttggtcag
actggttctgcatttgggcagactggttctacatttggacaaactggttctacctttgga
cagactggttctgcctttggacagactggttctgcctttggacagttcggacagagtagt
gctcctgcatttggtcaaactaacatcttcaataaaccttcaactggatttggcaacttg
ttttcaagttcttcaacattaactacgtctagcagctctccctttggacaaacaatggct
gctggtatgacacctttccaatcatctcagccaggtcaagcgtcaaatggctttggtttc
aacaacttcggtcaaacacaagcagctaatgcaactggaaatgctggtggactgggattt
tttggtcaaggcaacttcgggcaaacgcctgctcagccgagctctgttgttttgcaaccc
gttgttgttacaaatccgtttggaacacttcctgctatgcctcagatctcaataaaccaa
agtggaacttcaccttcaattcaatatggaatctccagcatgcctgttgttgacaaacct
gttcctgtaagaatatcatctctgcttacttctcgacaccttttacaaaagcgggccagg
ttgccggcaagaaagtaccgtcctggcgacaatggtccaaaggttccattcttcgctgat
gacgaggagaactcctcgagtacgccaaaggcagatgctcttttcattccgagggagaac
cctagagctctagttatacgcccagttcaacagtggtcttcaagggtcaaatctacaatt
ccaaaggaccgccctagtgctccaccacatgaaaatgggaagagttcagaaatagccact
gatgcggcaaacaaccaaaacgataacggagaaattggttctgctgaagaaagaactcac
ccatttgtcaatggaaatcagaaaacaaacggcaccacaagcacataccacgctggagag
aaagaccttccctccagaacactaggcggacaccgagccggaaaagccgaagttgtttac
gagaacggtgcagatatcgattcgcttatgcctaagctacgccaatccgattatttcacc
gagccaagtatccgggaactagcggctaaagaaagagcggatccaggttattgcaggcga
gttagagactttgtggtgggacgacacggttatgggagcataaagttcatgggagagact
gatgttcgtaggctagacttagaatctgtggttcagttcaataacagggaagtgattgta
tacctggacgagagcaagaaaccggctgttgggcaagggctgaataaaccggcggaggtg
acgttgctgaatataaaatgtatcgataaaaagacagggaaacagtttactgaaggagag
agagtcgagaagtataagacgatgcttaagaggaaagctgaggcacaaggagctgagttt
gtatcgtttgatcctgttaaaggcgagtggaagtttcgggtcaaacattttagtgcctat
aagctcgatgatgaagacgacgatgaagcttag
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