Raphanus sativus (radish): 130510156
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Entry
130510156 CDS
T06014
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130510156
09122 Translation
03013 Nucleocytoplasmic transport
130510156
03015 mRNA surveillance pathway
130510156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
130510156
03041 Spliceosome [BR:
rsz03041
]
130510156
03009 Ribosome biogenesis [BR:
rsz03009
]
130510156
03012 Translation factors [BR:
rsz03012
]
130510156
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130510156
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130510156
mRNA cycle factors
Stress granule specific factors
130510156
Spliceosome [BR:
rsz03041
]
Complex C
Other components
EJC/TREX
130510156
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
90S particles
Helicases
130510156
Translation factors [BR:
rsz03012
]
Eukaryotic type
Initiation factors
eIF-4
130510156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
NAT10_TcmA_helicase
SWI2_SNF2
AAA_19
nSTAND1
UvrD-helicase
AAA_16
ResIII
Motif
Other DBs
NCBI-GeneID:
130510156
NCBI-ProteinID:
XP_056862494
UniProt:
A0A9W3DF86
LinkDB
All DBs
Position
3:19845467..19847332
Genome browser
AA seq
343 aa
AA seq
DB search
MTTFQSMAIGENLLLGISECGFQKPTRVQEACTEKIAGGESLFVTARSGSGKSAAIAIAV
IQKVNASNPKIQVIILSARFKLAVELEKAIQQLGRHKNVRAHAMSAGSPWMQGTQILIGV
PNFLLEKMRSGTVNVSNAHVIIVDDAEEMDRFSGSINELINFTSANINQVCFLGSTIPSS
LVAHARDFDVHIDDISVVEKHKDVEHYEYDVKNDVEKMKRLREILMANDNAIIFCNSKST
ARFLHSALELPDHVCAMMDGELLPRKRDILVDSLRSGDLKYLITTDVESSKLRASLVVMY
DIPTCLEVYMDRSHRVCRGKAVSLVKPSDKSRMKLIKDTPRSV
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgacgacctttcagagcatggccatcggtgagaatctgctcctcggtatctcagaatgt
ggcttccagaaacctactcgagttcaggaggcttgcacggaaaagatcgccggtggagag
agtttgttcgtgacggcgagatccggcagtgggaagagcgccgccatagccatcgccgtc
attcagaaggttaacgcgtcgaatccaaagattcaagtgatcatactttcagctaggttc
aagcttgctgtagaactggagaaagcaatccagcagcttggaaggcacaaaaacgtcaga
gcacatgccatgtctgctggttcgccctggatgcaaggaactcagattctcattggcgtc
cccaattttcttttagagaagatgaggagcggaactgttaatgtgtctaatgcacatgtc
atcattgtcgatgatgctgaggaaatggatcgattctctggaagcataaatgaacttatc
aatttcacatctgcaaacatcaaccaggtctgcttccttggttctactataccctcaagt
cttgtcgcacatgcaagggattttgatgttcacattgatgacatttctgtggttgagaaa
cataaggacgttgaacattacgaatatgatgtgaaaaatgatgttgagaagatgaagagg
ctgcgtgaaatcctgatggctaacgacaacgcaatcatcttttgcaatagcaaatcaaca
gcgaggtttctacattctgcgttggaactccctgatcatgtgtgtgctatgatggatggg
gagcttctccctaggaagagggacatcctcgtcgacagtctgcggtcaggtgatctcaaa
tacctcatcactacagacgtcgagtcctcgaagctcagagcttctctcgtcgtcatgtat
gatatccccacctgccttgaggtctacatggaccgctctcaccgggtctgtcgcggcaag
gcagtctctttggtcaaaccatcagataaaagccgcatgaagctgataaaggacacccca
aggagtgtgtga
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