Raphanus sativus (radish): 130510874
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Entry
130510874 CDS
T06014
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit D
KO
K07466
replication factor A1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03030
DNA replication
rsz03420
Nucleotide excision repair
rsz03430
Mismatch repair
rsz03440
Homologous recombination
rsz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130510874
03420 Nucleotide excision repair
130510874
03430 Mismatch repair
130510874
03440 Homologous recombination
130510874
03460 Fanconi anemia pathway
130510874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rsz03000
]
130510874
03032 DNA replication proteins [BR:
rsz03032
]
130510874
03400 DNA repair and recombination proteins [BR:
rsz03400
]
130510874
Transcription factors [BR:
rsz03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130510874
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130510874
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130510874
MMR (mismatch excision repair)
130510874
DSBR (double strand breaks repair)
HR (homologous recombination)
130510874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
DUF223
tRNA_anti-codon
Motif
Other DBs
NCBI-GeneID:
130510874
NCBI-ProteinID:
XP_056863549
UniProt:
A0A9W3DIF3
LinkDB
All DBs
Position
4:9145942..9148890
Genome browser
AA seq
626 aa
AA seq
DB search
MQTSVTPDAISAVLSNPSFDSSSSDRSEIVVQVVDLKPIGNRYTFTANDGKTKVKAMFTA
SLTPEIISGKIQNLGLIRLLEFTVNDISSKSTKYFLVTKCEEVSSALDSEINLEGKSEEE
EEAGEAKRQKLDNSSVSDVVSTGITLKPKQESVAKSASQIITEQRGNVAPAARMSMTRRV
HPLVSLNPYQGSWTIKVRVTNKGVMRTYKNPKGEGCVFNVELTDEEGTQIQATMFNDAAR
KFYDMFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENAEVEEASDEEMFVPETKFNF
VPIEELGMHVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESKRTVVVSLW
NNLATGIGQELLDMADKSPVIAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSWF
DSEGKGTSMSSIGSGMSPSAKNGSWSMYTDRVPLSQITSNPSLGEGKPVFFSTRGYISFI
KPDQTMWYQACKTCSKKVTEAMDSGYWCEGCQKKDEECSLRYIMVVKVSDSTGEAWFSSF
NEEAEKIIGCSADELNKLRSEGGEVNEFQTKLKEATWSSHVFRISVTQNEYNGEKRQRIT
VKAVAPVDFAAESRFLLQDISKKNNA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcagacttcagtgaccccagatgctatctccgccgtattatcaaacccatctttcgat
tcctcctcctcagatcgatctgagatcgtcgttcaagtggttgatcttaagcctatcggg
aaccgatacactttcactgcgaatgatgggaagacgaaggtgaaagcaatgtttacagct
tcattaacacctgagatcatttctgggaagatccagaatctgggacttattcgtctcctt
gagttcactgttaacgacatttcaagcaaatcaaccaaatacttccttgtgacaaaatgt
gaggaggtttcttctgcgcttgattctgagattaacttggagggtaagagtgaggaggag
gaggaggctggtgaggccaagaggcagaagctagataactcttccgtgagtgatgttgtc
tccactggaatcactttgaaacccaagcaggagtctgttgccaaatcggcttcccagata
atcactgaacagaggggaaatgttgcaccagctgcaagaatgtccatgactagaagagtt
catccacttgtgtccttgaatccctatcaaggaagctggaccatcaaagtccgagtcact
aacaagggagtcatgagaacctacaaaaaccctaagggagaaggatgtgtcttcaatgtc
gaactaactgatgaagaaggaactcaaattcaagccacgatgttcaatgatgctgcacgg
aagttttatgacatgttccagttgggaaaggtttattatatctctaggggatcacttaaa
cttgctaacaagcagttcaagacagttcagaatgattatgagatgacgctgaatgaaaac
gcagaggtggaggaagctagtgatgaggaaatgttcgttcctgagactaaattcaacttt
gtacccattgaagagttgggtatgcatgtgaatcagaaggagcttattgatctaattgga
gttgttcaaagtgtttcccctaccatgagtattagaaggagaactgacaacgagatgata
ccaaagagggatataactttggctgatgagtcaaagagaactgttgtggtgtcactgtgg
aacaacttggcaaccggcataggtcaagaactgctagacatggctgataagtctcctgtg
attgcaatcaagtctctcaaagttggagactttcaaggtgtttcattgtccaccatcagc
agaagcaatgtagtgataaatcctgaatcaccagaagctaaaaagcttaaatcttggttt
gattctgaaggcaaggggacatccatgtcttccattggctcagggatgagcccatctgct
aagaatggatcttggtctatgtatactgatcgagtcccactctctcaaatcactagcaac
ccatctctaggcgagggaaagcctgtgtttttcagcaccaggggttacataagcttcatc
aagccagaccagacaatgtggtatcaagcttgtaagacttgtagcaagaaagtaactgaa
gcaatggactctggttactggtgtgagggttgccagaaaaaggatgaagaatgcagccta
aggtacataatggtagtgaaagtctctgactcaacaggagaagcttggttttcctcattc
aacgaagaggcagagaagattattggatgttcagctgatgagctcaacaaactaagatca
gagggaggtgaagtgaatgaatttcagacaaagctgaaagaagcaacatggtcctctcat
gtcttcaggatcagtgtcactcagaatgagtataacggtgagaagaggcagaggataact
gttaaagcggtagctcctgttgattttgctgctgagtcaagatttttgctccaagacatc
tccaagaagaataatgcataa
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