Raphanus sativus (radish): 130511661
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Entry
130511661 CDS
T06014
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4-like
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03022
Basal transcription factors
rsz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130511661
09124 Replication and repair
03420 Nucleotide excision repair
130511661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
130511661
03400 DNA repair and recombination proteins [BR:
rsz03400
]
130511661
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
130511661
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
130511661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
130511661
NCBI-ProteinID:
XP_056864977
UniProt:
A0A6J0LWR7
LinkDB
All DBs
Position
1:complement(8083989..8086312)
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AA seq
306 aa
AA seq
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MASVASKLYSDDVSLLVLLLDTNPLFWSNTSTTFSQFLSHVLAFLNAVSGLNQLNQVVVI
ATGYSSCDYIYDSSLASNVMSSESGSRTGMPALFGSLLEKLEDFIARDEELIKEGQEHHD
DDNRISSSFLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQ
RLMVPIDSCYIGTQNSAFLQQASYITGGVHHAPKQLDGLFQFLTTIFATDLHTRSFVQLP
KPVGVDFRASCFCHKKTIDMGYVCSVCLSIFCEHHKKCSTCGSVFGQSKLDGVSTVSDKK
RKAPDS
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgttgcttctaagctctattcagacgatgtcagtcttctagtgttgttgctt
gatactaatcccttattctggagcaatacatcgactacattctctcagttcctctctcat
gtgcttgcttttctgaacgcggtttcgggattgaatcaactgaaccaagttgttgtgata
gctactggatacagctcatgtgattacatctatgattcgtctttggcatcgaatgtgatg
agctcagagagcggtagtagaactggaatgcctgctctttttggttctttgcttgagaag
ctggaagattttattgccagagatgaggagctcatcaaggaggggcaggagcatcatgat
gatgataatagaatatcttcttctttcttgtcaggatcactctccatggctctttgctac
atacagagggttttccgttctggacatcttcatccccagcctcggattttatgcttgcaa
ggctctccggatggcccggaacaatatgtagctgttatgaactctatcttctcagcacaa
cgcctaatggtgcccattgattcttgttacataggtacacagaactcggcatttctgcag
caggcatcttacataacaggcggtgtacatcatgcacctaaacagttggatgggctgttt
cagtttctaacgacaatctttgccactgatttgcacacccggagctttgtgcagcttcct
aaacccgtaggcgttgattttcgagcatcgtgtttttgccacaagaagactatcgatatg
gggtatgtttgttcggtatgtctgtccattttttgtgagcatcacaagaaatgttcaacg
tgcggttctgtttttggtcagtcaaagcttgatggtgtttcaactgtgagtgataagaag
agaaaggctcctgattcttaa
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