Raphanus sativus (radish): 130511731
Help
Entry
130511731 CDS
T06014
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130511731
03015 mRNA surveillance pathway
130511731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
130511731
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130511731
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130511731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Blo-t-5
PG_binding_2
Motif
Other DBs
NCBI-GeneID:
130511731
NCBI-ProteinID:
XP_056865212
UniProt:
A0A9W3DMN3
LinkDB
All DBs
Position
4:47172732..47175621
Genome browser
AA seq
497 aa
AA seq
DB search
MADTVEKLPTDEASSSSVEASITGENTEPTTTTTEKTKWGDVEDDDEEEANAVSELNSLS
IKEEEKHESILDEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKI
QAISLPMIITPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPSLRQPQALCICPTRELANQN
MEVLQKMGKFTGITAEVAVPESNQGATFARRAPVSAQVVIGTPGTLKKWMAFKKLGLNHL
KILVFDEADHMLATDGFRDDSLRIMKDIKRVNPNYQVLLFSATFNETVKDFVQRTVESAN
QLFVKREDLALDSVKQYKVVCPKEQDKIEVIKDQIMELGDIGQTIIFVKTKVSASKVHKA
LAEMGYDVTSVHGSMSQEERDKIVKEFKDCLTQVLIATDVLARGFDQQRVNLVVNYNMPT
KYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLLENGDDKEVMEKIERYFGAQVKEIKSWN
SEEEYKSALKEAGLLDE
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggccgacactgtagagaaactccccaccgatgaagcatcttcatcctccgtagaagca
tcaatcaccggcgagaacacagagcccacgacaacaacaacggagaagacaaagtggggc
gatgtcgaggatgacgacgaagaggaagcaaacgcagtctcggagctcaactctttaagt
atcaaggaagaagagaaacatgaatctatccttgacgaacccgaagactcaaacatcaaa
gcggttacgtcaggtgacacaccgtatacatcagcgagtaggtttgaagatttgaacttg
tcacctgagttgatgaaaggcttgtacgtggagatgaagttcgagaaacctagcaagatc
caagctattagtttgcctatgatcatcacaccgcctcataagcatctcattgcccaggcc
cataatggatctggcaagactacctgtttcgttcttgggatgctcagtcgtgttgacccc
agtctcagacagcctcaagctctttgtatttgtcccaccagagaattagcaaaccagaat
atggaagttcttcagaagatggggaagtttactggtatcactgctgaagttgctgtccct
gagtcgaatcaaggtgcaacctttgcaagaagagcacctgtgtctgcccaagttgtgatt
ggcacccctgggacacttaaaaagtggatggcgtttaagaaacttggtctaaatcatttg
aagattttggttttcgatgaggctgaccatatgcttgctacggatggctttagggatgat
tctttgaggataatgaaagacattaagagagttaatcccaattaccaggttcttctgttc
tcggcaacgtttaacgaaactgtcaaagattttgttcagaggacagtcgagagcgctaac
caactctttgtaaaaagagaggatctagctttggactcagtaaaacagtacaaagtggtt
tgcccaaaggagcaagacaagattgaagtcatcaaggatcagatcatggagctgggggat
attggccagaccataatatttgtgaaaacgaaggtgtcagcaagcaaagtgcacaaagct
cttgcggaaatggggtatgacgtcacaagtgttcatggtagcatgagtcaagaggagaga
gataagatagtgaaggagttcaaagactgccttactcaagtcctcattgcaactgatgtc
cttgcaagaggttttgaccagcaacgggtgaatttggttgtcaactataacatgcctact
aaatatgaaaccggggagccagattatgaggtttaccttcacagagttggaagagctggt
cggtttggtcgtaaaggggctgtgttcaacctccttctagagaatggggatgataaagag
gtgatggagaagatagagcgctacttcggagcgcaagttaaggagattaagtcttggaac
tcagaggaagagtacaagagtgccctcaaggaagctggcctgcttgatgagtga
DBGET
integrated database retrieval system
