Raphanus sativus (radish): 130511764
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Entry
130511764 CDS
T06014
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 2
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130511764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
130511764
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130511764
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130511764
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130511764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
FTP
Motif
Other DBs
NCBI-GeneID:
130511764
NCBI-ProteinID:
XP_056865323
UniProt:
A0A9W3DP70
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All DBs
Position
4:complement(48776753..48780992)
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AA seq
601 aa
AA seq
DB search
MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKTAATDDVPESAPLEGYFLRYRWYRVQSDK
KVTICSVHPTEQATLQCVFCSKRRALVAKSYHCSPKCFTDAWQHHKTLHERAAAENGNEE
DELSRFNSTGSGALASTLSGSMSNLTLANNGPTPFYPSSIAQKNNGGETLIEVGGCKTYT
PTADDIGYVLKFECVVANAETKQSVGHPSTILTSRVIPAPSPSPRRLIPVNGADVMSHMD
QDGRIQSAGSFTMLSYNILSDTSASSDLYSYCPPWALSWPYRRQNLLREIVGYRADVVCL
QEVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFSHVKKYDV
EFNKAAQSLTEAIIPHTQKRTALNRLVKDNIALIVVLESKFGNQPTDPSGKRQLICVANT
HVNVQQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTLPGSAPHTLLVRGKVDPL
HPDLLVDPLGILRPHTKLTHQLPLVSAYSSFVRPVMGLGLDQHRRRMDLNTNEPLFTNCT
REFIGTHDYIFYTADTLMVESLLELLDEDGLRKDTALPSPEWSSNHIALLAEFRCMPRTR
R
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgctaagcgtgatccgagtgcatctcccttccgagattcccatcgttggctgtgaattg
actccttacgtgcttgttcgccgccctgataagaccgccgccactgacgatgtccctgaa
tctgctcctctcgaaggctacttcttgagatacagatggtatcgtgtacagagcgataag
aaagtaaccatttgcagtgtgcatccaacggaacaagccaccttacaatgcgtattctgc
tcaaagcgtagagccctcgttgcaaaaagctaccactgctcacccaaatgcttcacagac
gcgtggcagcaccacaagactctgcacgagcgagcagccgcagagaacggaaacgaggaa
gacgagttatcccgtttcaacagcacaggctccggtgctctcgccagcaccttatccggc
tcaatgtcgaatctcaccctcgccaataacggccccacgccgttttatccttcgagcatc
gctcagaagaacaacggaggagagacgcttatcgaggtcgggggctgcaaaacgtacacc
ccgaccgctgacgacattggctacgtgttgaagttcgagtgtgtggtggctaacgcggag
actaaacagtctgtgggacatcctagtaccattttgacttcacgtgtgatccctgcgcct
tctccgagtccacgtaggcttatccctgttaacggagctgatgtgatgagtcacatggat
caagatggtcggattcagtctgcaggatcgttcactatgctttcttataatattttgtct
gatacttccgcaagtagcgacctttacagttactgtcctccttgggctctttcttggccg
tacagaagacagaatctgttgagggagattgttggttatcgtgctgatgtagtttgccta
caagaggtacaaagtgatcatttccatgagattttcgcaccggagttggataaacatggg
tatcaagctctctacaagaggaagactaatgaggttctcagcggaagcacaagtgcaatt
gatggatgtgcaacatttttcagacgggatagattttcacatgtcaagaaatatgatgtt
gaattcaataaggctgctcagtctttgactgaggctataatccctcatacgcagaagaga
actgctttaaaccgacttgtgaaggataacattgcgttaatagttgttcttgaatcgaag
tttggtaatcaacctactgatccttcagggaagcgccagcttatctgtgtggcaaacaca
catgttaatgttcaacaagagctgaaggacgtgaagctctggcaggttcatactttatta
aaagggctagagaaaatagctgctagtgctgacattcctatgcttgtttgtggagacttc
aatacacttcccggaagtgctcctcatacacttcttgtcaggggaaaggttgatccactg
catccagatctattggttgatccacttggaatcctgcgtcctcataccaaactgactcat
cagttacctttggtgagcgcttactcatcgtttgtgagaccagtaatgggacttggattg
gaccaacacagaaggagaatggatcttaatacaaacgagcctttgtttaccaattgtaca
agggagttcattggcactcatgactatatattttatacagcggatacattaatggtggaa
tctttattggagttgctggatgaagatggattgagaaaggatacagctcttccttcacct
gaatggtcttcaaatcatattgcactcttggctgagtttcgatgcatgccgagaaccaga
cgctaa
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