Raphanus sativus (radish): 130512403
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Entry
130512403 CDS
T06014
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
130512403
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
130512403
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
130512403
NCBI-ProteinID:
XP_056866334
UniProt:
A0A9W3DRA2
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Position
5:36662553..36665485
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AA seq
464 aa
AA seq
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MDCHVYYGLHRRCVLRKKTWILNFSVFFLHIFTSSKALDVTQYGAIGDGVTDDSQAFLKA
WEVVCSGTGDGQLIVPAGMTFVLQPLKFQGSCKSTPIAVQILGNMVASSRGNWEGDKDQW
ILFSDIEGLVVEGNGEINGQGSSWWEHKGSSRPTALKFKSCNNLRLSGLTHVDSAKAHIH
INNCNGVSISNLRINAPESSPNTDGIDVAASSNVIIQDCVIATGDDCIAINSGTSNIRVS
GIDCGPGHGISIGSLGKDGETASVEDVCVQNCNFRGTTNGARIKTWPGGSGYARRITFNG
ITLDNVENPIIIDQHYNNGGSEKNTDDKSSAVEVSKVVYSNFVGTSKSEYGVDFRCSEAV
PCTEIIMKDVRIETASSGSGQVAQGQCLNVRGVSTLAVPGLECLALSTDMLSLAELPEQT
CMLPQPSVQPSTRPMQDPFWVYGSGGKRLRVFNVVLTSFIFLVL
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggactgtcacgtatactacggcttacatcgacgatgtgttttaaggaagaagacgtgg
atcttaaatttctcagtgttctttctccatatctttacatcttcgaaagcattggatgtt
actcaatacggagcaattggagatggagttacagacgattctcaggcgttcttgaaagcc
tgggaagttgtctgtagcgggacaggggatgggcagcttatcgttccggcagggatgaca
tttgtgttacagcccttgaagtttcaaggttcttgcaaatcgacccctattgctgttcag
attttgggcaatatggttgcatcaagtagagggaactgggaaggagacaaagatcaatgg
attctcttctcagacatagaagggcttgtggttgaaggcaacggtgaaatcaacggccag
ggttcgagctggtgggaacacaaaggcagctctagaccaaccgcattgaagttcaagagc
tgcaacaaccttagactaagtggactaacgcacgtagatagtgcaaaggctcacattcac
ataaacaattgtaacggtgtgagcatctcaaatctccggataaatgcaccggaatcaagt
cctaacactgatggaatcgacgtcgctgcttcatccaatgttatcatccaggattgcgta
atcgccaccggtgacgattgcattgcgataaactcggggacgtctaacatcagagtttcc
ggtatagattgcggaccaggccatggaataagcataggaagcttggggaaagatggagag
acagcttcagtggaggatgtatgtgtccagaactgtaactttcgaggaactacgaatgga
gctcggatcaaaacctggccgggaggatcaggttacgcaagaaggattactttcaatgga
attactctagataacgtggaaaacccgatcataatcgatcagcattacaacaatggaggt
tctgagaaaaacacagatgataagtcatcggcggtggaagtaagcaaagtcgtgtatagt
aatttcgtgggtacgtccaagtcagagtacggagttgactttaggtgtagcgaggctgta
ccatgcaccgagattattatgaaagatgtgagaatagaaacagcatcatcaggatcagga
caagtcgcacaaggacagtgcttaaacgtgagaggtgtgtccactcttgccgtaccaggt
ttagaatgtttagcactttccacagatatgttatcattggcggagttgccggaacaaact
tgtatgttgccgcaaccatcagtgcaaccaagtacacgaccgatgcaggatccattttgg
gtttatggaagcggagggaaacgactcagagtttttaatgtagtattaacttcatttatc
tttctggttttataa
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