Raphanus sativus (radish): 130512895
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Entry
130512895 CDS
T06014
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130512895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
130512895
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130512895
mRNA degradation factors
5'-3' decay
Lsm complex
130512895
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
130512895
NCBI-ProteinID:
XP_056867341
UniProt:
A0A6J0NR69
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Position
5:37278872..37280695
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDRKILVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDQ
YCDIPLGLYVIRGENVVLIGEMDTEREELPPHMVRVSETEIKRAQKVEREASELRGTMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctggtcctgaagatatttacctttcaacttcactcgccagttatctcgat
agaaagatacttgtgctacttagagatggtagaaagctaatgggaacgctccgttctttt
gatcaatttgccaatgcggttctagaaggtgcttgcgaaagggtcattgtaggtgaccaa
tactgcgacattcctttaggcctctatgtaatccgtggagagaatgttgttctcattggt
gagatggacacagagagagaggagcttcctccacatatggttcgcgtctcagagaccgag
attaagagggcgcagaaagtggagagggaggcaagtgagctgagaggaacaatgaggaag
agaatggagtttcttgactttgattaa
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