Ramlibacter tataouinensis: Rta_04380
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Entry
Rta_04380 CDS
T01544
Symbol
recQ2
Name
(GenBank) Candidate ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rta_04380 (recQ2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rta03019
]
Rta_04380 (recQ2)
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_04380 (recQ2)
Enzymes [BR:
rta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rta_04380 (recQ2)
Messenger RNA biogenesis [BR:
rta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rta_04380 (recQ2)
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rta_04380 (recQ2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEG91509
UniProt:
F5Y605
LinkDB
All DBs
Position
complement(445584..447311)
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AA seq
575 aa
AA seq
DB search
MAGRKAAAPATRQQVQATLERTFGVRRMRPGQRAVIDRVLAGRPTLAIMPTGAGKSLCYQ
LPAVLLPGRTVVVSPLIALMKDQCESLREHGVHTVQLNSALDSEEARAAQAAAEDGSARI
LLLTPEKLAEPGFVQSLSGHPTSLLVVDEAHCISQWGHDFRPAFLEIGPAVEALGRPTVL
ALTATATEEVARDIAQQLGIPAAGIVNTGAYRPNLALKVEQVAREPEKLERALAFVRGAQ
GSGLVYTATVKAAQALHEALLAADESAGLYHGKLPAAARAAAQDDFMEGRLRVMVATNAF
GLGIDKPDIRFVLHYQLPSGLEAYYQEAGRAGRDGQAALCHLLYLRADKAVQQFFMAGRY
PTDDDAVALYQALRGPPHEGGAWTLALLQAWLGRPKSKLQVALGLLRRRGIVAIDADGGI
RLLRENLEGDAVRPLMAAYRDKREQDRETLERMVFYAQTGQCRWRVLLEHLEGDAGFEHC
GHCDNCVRIRQAEAAQASAPAVQPDAGLRKPAPASPPALAPGDLVKVRRYGRGEVREASS
VQVTVAFADGQLRSFQPEYVARYKPRSAPASTQAA
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggcaggccgcaaggcggctgcgccggccacgcggcagcaggtccaggcgacgctggag
cgcaccttcggcgtgcgccgcatgcgccccggccagcgcgcggtgatcgaccgggtgctg
gccggccggcccacgctggccatcatgcccaccggcgcgggcaagtcgctgtgctaccag
ctgccggccgtgctgctgcccggccgcacggtcgtggtctcgccgctgatcgcgctgatg
aaggaccagtgcgagtcgctgcgcgagcacggcgtccacacggtccagctcaacagcgct
ctggatagcgaggaggcgcgtgcggcgcaagccgccgccgaggacggctccgcgcgcatc
ctcctgctcacgccggagaagctggccgaaccaggcttcgtgcaatcgctgtccgggcac
cccaccagcctgctggtggtggacgaggcgcactgcatctcgcagtggggccacgatttc
cggccggccttcctggagatcgggccggcggtcgaggccctgggccggcccaccgtgctg
gcgctcacggccacggccaccgaggaggtggcgcgtgacatcgcgcagcagctgggcatc
cccgccgccggcatcgtcaacaccggcgcctaccggcccaacctggcgctcaaggtggag
caggtcgcgcgcgagccggagaagctcgagcgcgccctggccttcgtgcgcggcgcccag
ggcagcggcctggtctacaccgccaccgtgaaggccgcgcaggcgctgcacgaggccctg
ctggccgccgacgaaagcgccggcctgtaccacggcaagctgcccgcggccgcgcgcgcc
gcggcgcaggacgatttcatggagggccgcctgcgcgtcatggtggccaccaacgccttc
ggcctgggcatcgacaagcccgacatccgcttcgtgctgcactaccagctgccgtccggg
ctggaggcctattaccaggaggccggccgcgccgggcgcgacgggcaggcggcgctgtgc
cacctgctctacctgcgcgccgacaaggcggtgcagcagttcttcatggccggccgctac
cccaccgacgacgatgccgtggcgctgtaccaggccctgcgcgggccgccgcacgagggc
ggcgcctggacgctggcgctgctgcaggcctggctggggcgtcccaagtccaagctccag
gtggcgctgggcctgctgcgccggcgcggcatcgtcgccattgatgccgatggcggcatc
cggctgctgcgcgagaacctggaaggcgacgcggtgcgcccgctgatggcggcctaccgc
gacaagcgcgagcaggaccgcgagaccctggagcgcatggtgttctacgcgcagaccggc
cagtgccgctggcgggtgctgctcgagcacctggagggcgatgccggattcgagcactgc
ggccattgcgacaactgcgtgcgcatccggcaggccgaggccgcacaggcgtctgcgccg
gcggtccagcccgacgccggcctgcgcaagcccgcgcccgcatcgccgcctgccctggca
cccggcgacctggtcaaggtcaggcgctacggccgcggcgaggtgcgcgaggcgtccagc
gtgcaggtgacggtggccttcgccgacgggcagctgcgcagcttccagcccgagtacgtc
gcacgctacaagcccaggagcgccccggccagcacccaggcggcctga
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