Ramlibacter tataouinensis: Rta_09890
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Entry
Rta_09890 CDS
T01544
Name
(GenBank) exoribonuclease R-like protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rta
Ramlibacter tataouinensis
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rta03016
]
Rta_09890
Enzymes [BR:
rta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rta_09890
Transfer RNA biogenesis [BR:
rta03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Rta_09890
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Ortholog
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GFIT
Motif
Pfam:
RNB
ProQ_C
RNase_II_C_S1
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
AEG92073
UniProt:
F5XZP4
LinkDB
All DBs
Position
complement(1018254..1020302)
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AA seq
682 aa
AA seq
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MFVLFEEAGKFQAGRVLSEAEASAQVELDSGKRVKVKAAHVLLKFDKPQPAELIARAQAL
APSIELELAWEFAPEEEFGFADLARDYFNDDASLEQQAAALFRLFEAPHYFRRAGKGRFR
KAPAEIVQQALAGIEKKQQQQAQIGAWAAELAAGSCPPAIREQLYRILFKPDKNGPEYKA
VVEASRSTQLPPLALLQKAGAITSPYQFHWKRFLFDNFPKGTGFPPLAAPAIRDELPLAP
VRAFSIDDSSTTEIDDALSVQGLGSGTVTVGIHIAAPGLALQPSTPIDQVARSRLSTVYM
PGYKITMLPDEVVQAYTLQEGRDCPAVSLYLSLDEATLVVKDSQTRLERVPIAHNLRHDQ
LDAFVTEAWLADADSPGGNVPEPASSLRGALSFLYRLARHLKGLRELVRGRPETFNRPDY
SFKLVGAGDAEPTGGEEVQITVRRRGAPLDLIVAEAMILANSSWGQWLADLGVPAIYRSQ
ASLAPGVKVRMGTKAAPHAGIGVKCYAWSTSPLRRYTDLVNQWQIIAAARHGRTAALAAP
FKPKDAELFSIISAFDAAYSAYNGYQAAMERFWTLKYLRQQGLGELTATVFKEGLVRADE
LPLVLPVLGAGDLPRGARVRVRLGEIDEIGLDVHGTVVERLDAERAPVSAEDDTGEEEAV
AGPIAIAVDVSEPEAPDHNPAP
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtcctatttgaagaggccgggaagttccaggccggccgggtgctgtccgaggcc
gaggcttcggcccaggtggagctggacagcggcaagcgcgtcaaggtcaaggccgcgcac
gtcctgctgaagttcgacaagccccagccggcggaactgatcgcccgggcccaggccctg
gcgccttccatcgagctggagctggcctgggagttcgcgcccgaggaggagttcggcttc
gccgacctggcgcgcgactacttcaacgacgacgccagcctggagcagcaggccgccgcc
ctgttccgcctgttcgaggcgccgcactacttccgccgcgccggcaagggccgtttccgc
aaggcgccggccgagatcgtccagcaggcgctggccggcatcgagaagaagcagcagcag
caggcccagatcggcgcctgggccgcggagctggcggccggcagctgcccgcccgccatc
cgcgagcagctttatcgcatcctgttcaagccggacaagaacgggcccgagtacaaggcc
gtggtcgaggcctcgcgcagcacgcagctgccgccgctggcgctgctgcagaaggccggg
gccatcacctcgccctaccagttccactggaagcgcttcctgttcgacaacttccccaag
ggcacgggtttcccgccgctggccgcgccggccatccgggacgagctgccgctggcgccg
gtgcgggcgttctccatcgacgactccagcaccaccgagatcgacgacgcgctgtcggtg
cagggcctgggcagcggcacggtaacggtgggcatccacatcgcggcgcccggcctggcc
ctgcagccgtccacgcccatcgaccaggtggcgcgctcgcgcctgtccaccgtctacatg
ccgggctacaagatcaccatgctgcccgacgaggtggtgcaggcctacacgctgcaggaa
gggcgcgactgcccggcggtgtcgctgtacctcagcctcgacgaggccaccctggtggtg
aaggacagccagacccggctggagcgggtgcccatcgcgcacaacctgcgccacgaccag
ctcgacgccttcgtcacggaggcatggctggcggacgccgactccccgggcgggaacgtg
cccgagccggcgtccagcctgcgcggcgcgctctccttcctgtaccgcctggcgcggcac
ctcaagggcctgcgcgagctggtgcgcggcaggcccgagaccttcaaccggccggactac
agcttcaagctggtcggcgccggcgatgccgagcccaccggcggcgaggaggtgcagatc
accgtgcgccgccgcggcgcgccgctggacctgatcgtggccgaggccatgatcctggcc
aacagcagctggggccagtggctggccgacctgggcgtgccggccatctaccgcagccag
gccagcctggcgcccggcgtcaaggtgcgcatgggcaccaaggccgcgccgcatgccggc
atcggcgtcaagtgctatgcctggagcacctcgccgctgcgccgctacaccgacctggtg
aaccagtggcagatcatcgccgcggcccgccatggccgcaccgccgccctggccgcgcct
ttcaagcccaaggacgcggagctgttctccatcatctcggccttcgacgccgcctattcg
gcctacaacggctaccaggccgccatggagcggttctggacgctgaagtacctgcgccag
cagggcctgggcgaactgaccgcgacggtgttcaaggaaggcctggtgcgcgccgacgag
ctgccgctggtgctgccggtgctgggcgccggcgacctgccgcggggcgcgcgggtgcgc
gtgaggctgggcgagatcgacgagatcggcctggacgtgcacggcacggtggtcgagcgg
ctggatgccgagcgggcgccggtgtcggcggaagacgacaccggcgaagaagaagcggtg
gccggccccatcgccatcgcggtcgatgtgagcgaaccggaagcgcccgaccataatcct
gctccgtga
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