Ramlibacter tataouinensis: Rta_12190
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Entry
Rta_12190 CDS
T01544
Symbol
orn
Name
(GenBank) candidate oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Rta_12190 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rta03019
]
Rta_12190 (orn)
03009 Ribosome biogenesis [BR:
rta03009
]
Rta_12190 (orn)
Messenger RNA biogenesis [BR:
rta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rta_12190 (orn)
Ribosome biogenesis [BR:
rta03009
]
Eukaryotic type
Pre-60S particles
RNases
Rta_12190 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
pP_pnuc_1
Motif
Other DBs
NCBI-ProteinID:
AEG92304
UniProt:
F5Y1Q3
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All DBs
Position
1246241..1246828
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AA seq
195 aa
AA seq
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MADTAVPTPPPTLAKSDQNLVWLDCEMTGLDPEVDRIIEIAVIVTGPQLEPRIEGPVFAI
HQSDQQLDKMDAWNKGTHGRSGLIDKVKASTVAEAQAEAEVLAFLERYVPRNATPMCGNS
ISQDRRFLVRYMPRLEAFFHYRNLDVSTLKELAKRWHPEVYTGFRKQQKHTALADVHESI
DELAHYRQHFLRLPG
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaccgctgtccccacacccccgccgaccttggccaagagcgaccagaacctg
gtctggctcgattgcgagatgaccgggctggatcccgaggtcgaccgcatcatcgagatc
gccgtcatcgtcaccggtccgcagctcgagccgcgcatcgagggcccggtgttcgccatc
caccagagcgaccagcagctggacaagatggatgcctggaacaagggcacgcacggccgc
agcgggctgatcgacaaggtgaaggcgtccaccgtcgccgaggcgcaggccgaggctgag
gtgctggccttcctggagcgctacgtgccccggaacgccacgccgatgtgcggcaacagc
atcagccaggaccggcgcttcctggtgcgctacatgcccaggctggaggccttcttccac
taccgaaacctcgacgtcagcacgctcaaggagctggccaagcgctggcatcccgaggtg
tacaccggcttcaggaagcagcagaagcacaccgcgctggcggacgtgcacgaatccatc
gacgagctggcgcactaccggcagcatttcctgcgcctgcccgggtga
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