KEGG   Ramlibacter tataouinensis: Rta_12520
Entry
Rta_12520         CDS       T01544                                 
Symbol
hsdR
Name
(GenBank) Candidate type I site-specific restriction-modification system, R subunit
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
rta  Ramlibacter tataouinensis
Brite
KEGG Orthology (KO) [BR:rta00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:rta02048]
    Rta_12520 (hsdR)
Enzymes [BR:rta01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Rta_12520 (hsdR)
Prokaryotic defense system [BR:rta02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Rta_12520 (hsdR)
SSDB
Motif
Pfam: ResIII EcoEI_R_C SWI2_SNF2 DEAD HSDR_N Helicase_C AAA_11 AAA_34 HSDR_N_2 SNF2-rel_dom AAA_22
Other DBs
NCBI-ProteinID: AEG92337
UniProt: F5Y2H4
LinkDB
Position
1288035..1290485
AA seq 816 aa
MNKKDLSESDICDKFIRPAMEKAGWDGMVQVYREFPLRAGRVVIRGRRAKRDTSTVLRAD
YALFFKPNIPLAVVEAKDNNHAMGAGMAQAINYAQLLDVPFSFASNGDGFVFRDATLRDG
VLERNLALDEFPSPTELWARYCASKGWTPEVRQVTEHDYAPAKTPRYYQLNAINRTVEAV
ARGQNRALLVMATGTGKTYTAFQIIWRLWKSGAKKRILFLADRNILIDQTMVNDFRPFKG
AMAKLSPHAKGVEVVDSQGKTTVEDVDLAINRATKQVNKSYEIYLSLYQAVSGTEEDRNI
YKQFSPDFFDLIIIDECHRGSAAEDSAWRDILSYFSTATQIGLTATPKETADVSNTDYFG
EPVYTYSLRQGIEDGYLAPYKVIRVDLDKDAFGWRPPEGMTDKLGNVIEDRVYTGADMNR
KLVLERRDEVVATKITQYLKATNRYDKTIVFCEDIEHAARMRQALTNANADLCATQPNYV
VQITGDNPEGKRELDNFIDPEKTYPVVATTSKLMSTGVDAQTCKLIVLDQNIKSMTLFKQ
IIGRGTRLREDLGKSWFTILDFKRATELFADPAFDGDPVQVYEPGPDQPVEPPQPPEPPQ
GGADGLPGAQPVGPGPLIGGNDGLAEPRKYIVGGSVNVAVARERVQYLNADGKLVTDSLR
DYTRINLGKAYDSLDGFLQAWNSAERKAALIEELEARGVFLEALADEVGKDFDPFDLLLH
VAYDQPPLTRRERAQRVKKRNVFTQYGPVARQVLETLLDKYADEGITTIESDAVLRVQPF
TDLGSPVELIRSFGGRPQYLKALATLERELYAPPQA
NT seq 2451 nt   +upstreamnt  +downstreamnt
atgaacaagaaagacctgtccgagagcgacatctgcgacaagttcatccgacctgccatg
gaaaaggcgggctgggatggcatggtgcaggtgtaccgagagtttccgctgcgcgccggg
cgggtcgttatccgtggacgccgggccaagcgtgacacttcgacggtgctcagggctgac
tacgccctgtttttcaagcccaacatccccctggccgtcgtcgaggccaaggacaacaac
cacgccatgggcgccggcatggcgcaggcgattaactacgcccaattgctggatgtgcca
ttcagcttcgcgagcaacggcgacggcttcgtctttcgcgacgccacactgagggacggg
gtgctcgaacgcaatctggcgctcgacgagttcccgtcacccaccgagctgtgggcacgc
tactgcgcctcgaagggctggacgcccgaagtgcgccaggtcaccgagcacgactacgcg
ccggccaagaccccgcgctactaccagctcaacgccatcaaccgcacggtcgaggcagtg
gcccgtggccagaaccgggcactgctggtcatggccaccggcaccggcaagacctacacc
gccttccagatcatctggcggctgtggaagagcggcgccaagaagcgcatcctgttcctg
gccgaccggaacatcctcatcgaccagaccatggtcaacgacttccggcccttcaagggc
gcgatggccaagctcagcccccacgccaagggcgtcgaggtggtcgacagccagggcaag
accacggtggaagacgttgacctggctatcaaccgcgccaccaagcaggtcaacaagagc
tacgagatctacctgtcgctgtaccaggccgtcagcggcacggaagaagaccgcaacatc
tacaagcagttctcgcccgacttcttcgacctcatcatcatcgacgagtgccaccgcggc
agcgccgccgaagactcggcctggcgcgacatcctgagctacttcagcaccgccacccag
atcggtctgacggccacgcctaaggaaaccgccgacgtgtccaacaccgactacttcggt
gagcccgtctacacctacagcctgcgccaaggcattgaagacggctacctcgccccgtac
aaggtgatccgcgtcgacctcgacaaggacgccttcggctggcgcccgcccgagggtatg
accgacaagctgggcaacgtcatcgaagaccgggtctacaccggcgcggacatgaaccgc
aagctggtgctggagcgccgcgacgaggtggtggcgaccaagatcacccagtacctgaag
gccaccaaccgctacgacaagacgatcgtcttctgcgaagacatcgaacacgctgcgcgc
atgcgccaggccctgaccaatgccaacgccgacctctgcgccacccagcccaactacgtg
gtgcagatcaccggcgacaaccccgaaggcaagcgcgagctcgacaacttcatcgacccc
gagaagacctacccggtcgtcgccaccacctccaagctgatgagcacgggcgtggacgcc
cagacctgcaagctgatcgtgctggaccagaacatcaaatcgatgacgctgttcaagcag
atcatcgggcggggcacgcggctgcgtgaggacctgggcaagagctggttcaccatcctc
gacttcaagcgcgccaccgagctgtttgccgacccggccttcgatggcgacccggtacag
gtctatgagccgggccccgaccagccagtcgagccgccgcagccaccggagccgccccaa
ggcggagccgatggactaccgggcgctcagccagtaggccccggccccctcatcggcggc
aacgatggtctcgccgagccccgcaaatacatcgtgggcggcagcgtcaacgtggccgtg
gcgcgcgagcgcgtgcagtacctgaacgccgacggcaagctggtcaccgacagcctgcgt
gactacacccgcatcaacctgggcaaggcctacgactctttggacggcttcctgcaggcc
tggaacagcgccgagcgcaaggccgcgctgatcgaggaattggaagcccgcggtgtcttc
ctggaggcactggccgacgaggtgggcaaggacttcgaccccttcgacctgctgctgcat
gtggcctacgaccagccgccgttgacccggcgtgaacgcgcccagcgcgtgaagaagcgc
aacgtcttcacgcagtacggcccggtggcacgccaggtgctggaaacgctgctggacaag
tacgccgacgagggcatcaccactatcgagagtgacgccgtgctgcgcgtgcagcccttc
accgacctgggctcacccgtggagctgatccgcagcttcggcggccgcccccaatacctg
aaagccctggccacgctggagcgcgagctctacgcgccgccgcaggcctga

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