Ramlibacter tataouinensis: Rta_12760
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Entry
Rta_12760 CDS
T01544
Symbol
uvrD
Name
(GenBank) Candidate DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03420
Nucleotide excision repair
rta03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rta_12760 (uvrD)
03430 Mismatch repair
Rta_12760 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_12760 (uvrD)
Enzymes [BR:
rta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rta_12760 (uvrD)
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rta_12760 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
Rta_12760 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AEG92364
UniProt:
F5Y2K1
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All DBs
Position
1328158..1330587
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AA seq
809 aa
AA seq
DB search
MRGRFLQCRMFPELQAADSPLLQHLNPEQRAAVTLPNEHALILAGAGSGKTRVLTTRIAW
LLSTGQVSPGGVMAVTFTNKAAKEMMTRLSAMLPVNVRGMWIGTFHGLCNRFLRAHYKLA
NLPQSFQILDTQDQLSAIKRLMKQHNVDEERFPAKETQWFIAGCKEDGLRPGDVEVRSEE
DRRKVEIYQLYEEQCQREGVVDFGELMLRSYELMRDNGPIREHYQRRFRHILIDEFQDTN
RLQYAWIKMFAGDPTGTSGSSNAVFAVGDDDQSIYAFRGARVGNMADFVREFQVAHQIKL
EQNYRSYSNILDSANALISHNRTRLGKNLRTDQGPGEPVRVYEAPTDLAEAQWMVEELRH
LVRGEGTSEGIPRHEIAILYRSNAQSRVIETALFNAAVPYRVYGGLRFFERAEIKHALAY
LRLLENPQDDTSFLRVVNFPPRGIGARSVEQLQDAARAARCSLHDAVSATTGKAGANLGA
FVAKIDVLREQTQNLSLREIIDLVLQHSGLVEHYKTEREGADRIENLEELVNAAESFVTQ
EGFGRDAVALPVDELRQSPASQGLDANLPQLNEPAPDYVPPDAETGETLSPLAAFLTHAA
LESGDNQAQAGQDAVQLMTVHSAKGLEFDCVFVSGLEEGLFPSERSMSDYEGLEEERRLM
YVAITRARKRLYLSYSQTRLLHGQTRYNIKSRFFDELPEHALKWLTPKNQNFGGSAFGFG
SGYPSTRHAGGGLPRDLAPGHFASPPVPAQKAAPSHGLRSGMQVFHAKFGEGTVLMLEGS
GDDARAQINFPRHGIKWLALSVAKLTPVA
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
ttgcgggggcgctttctacaatgccgtatgttcccagaactccaggcagccgactcgccg
ctgctgcagcacctcaatcccgagcagcgggcggcggtgacgctgcccaacgagcatgcc
ctcatcctggccggcgccggctcgggcaagacgcgcgtgctcactacccgcatcgcctgg
ctgctgtccaccggccaggtctcgccgggcggtgtgatggcggtgaccttcaccaacaag
gcggccaaggagatgatgacccgcctgtccgccatgctgccggtgaacgtgcgcggcatg
tggataggcaccttccacgggctgtgcaaccgcttcctgcgcgcgcactacaagctggcc
aacctgccgcagagcttccagatcctggacacgcaggaccagctgtcggcgatcaagcgc
ctgatgaagcagcacaacgtcgacgaggagcgcttcccggccaaggagacgcagtggttc
atcgccggctgcaaggaggacggcctgcgccccggcgacgtcgaggtgcgcagcgaggag
gaccggcgcaaggtcgagatctaccagctgtacgaggagcagtgccagcgcgagggcgtg
gtcgacttcggcgagctgatgctgcgcagctatgaactgatgcgcgacaacggccccatc
cgcgagcactaccagcggcgcttccgccacatcctgatcgacgagttccaggacaccaac
cggctgcagtacgcctggatcaagatgttcgccggggatccgacgggaacctccggttcg
tccaacgcggtgttcgcggtgggcgacgacgaccagagcatctacgccttccgcggcgca
cgcgtgggcaacatggccgacttcgtgcgcgagttccaggtcgcgcaccagatcaagctg
gagcagaactaccgcagctacagcaacatcctggactcggccaacgcgctgatcagccac
aaccgcacccgcctgggcaagaacctgcgcacggaccagggtcccggcgagccggtgcgg
gtgtacgaggcgcccaccgacctggccgaggcgcagtggatggtggaggagctgcgccac
ctggtgcgcggcgagggcaccagcgagggcatcccgcgccacgagatcgccatcctctac
cgcagcaacgcgcagagccgggtgatcgagaccgcgctgttcaacgccgccgtgccttac
cgggtgtacgggggcttgcgcttcttcgagcgggcggagatcaagcatgcgctggcctac
ctgcgcctgctggagaacccgcaggacgacacctcgttcctgcgggtggtgaacttcccg
ccgcgcggcataggcgcgcgcagcgtcgagcagctgcaggacgcggcccgcgccgcccgc
tgctcgctgcacgacgcggtgagcgccaccaccggcaaggcgggggccaacctgggcgcc
ttcgtcgccaagatcgacgtgctgcgcgagcagacgcagaacctgtcgctgcgcgagatc
atcgatctggtgctgcagcactccggcctggtcgagcactacaagaccgagcgcgagggt
gccgatcgcatcgagaacctggaagaactggtcaacgccgccgagagcttcgtcacccag
gagggcttcggccgcgacgccgtggcgctgccggtggacgagctgcgccagtcgccggcc
agccaggggctggatgcgaacctgccgcagctgaacgagcccgcgccggactacgtcccg
cccgatgccgagaccggcgagacgctgtcgccgctggccgcgttcctgacccacgccgcg
ctggagtccggtgacaaccaggcccaggccgggcaggacgcggtgcagctgatgacggtg
cactcggccaagggcctggagttcgactgcgtgttcgtcagcggcctggaggagggcctg
ttccccagcgagcgctcgatgtccgactacgaggggctggaggaggagcgccggctgatg
tacgtggccatcacgcgcgccaggaagcggctgtacctgagctattcgcagacgcggctg
ctgcacggccagacccgctacaacatcaagagccgcttcttcgacgagctgcccgagcac
gcgctcaagtggctcacgcccaagaaccagaacttcggcggctcggccttcggtttcggc
tcgggctatcccagcacgcggcacgcgggcggcggcttgccgcgcgacctggcgcccggc
cacttcgccagcccgccggtgccggcgcagaaggccgcgccctcgcacggcctgcgctcg
ggcatgcaggtgttccacgccaagttcggcgagggcacggtgctgatgctggagggctcg
ggcgacgacgcgcgcgcccagatcaacttcccgcggcacggcatcaagtggctggccctg
tcggtggccaagctcacgcccgtggcctga
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