Ramlibacter tataouinensis: Rta_12840
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Entry
Rta_12840 CDS
T01544
Symbol
polA
Name
(GenBank) Candidate DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03030
DNA replication
rta03410
Base excision repair
rta03420
Nucleotide excision repair
rta03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rta_12840 (polA)
03410 Base excision repair
Rta_12840 (polA)
03420 Nucleotide excision repair
Rta_12840 (polA)
03440 Homologous recombination
Rta_12840 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rta03032
]
Rta_12840 (polA)
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_12840 (polA)
Enzymes [BR:
rta01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rta_12840 (polA)
DNA replication proteins [BR:
rta03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rta_12840 (polA)
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Rta_12840 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rta_12840 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
Homez
Motif
Other DBs
NCBI-ProteinID:
AEG92372
UniProt:
F5Y2K9
LinkDB
All DBs
Position
1336220..1339084
Genome browser
AA seq
954 aa
AA seq
DB search
MSEPLSESPDEEQAPAAQAPEGAGPKVLLLVDGSSYLYRAFHAMPDLRAVPGDPGSPATG
AIRGMINMMQKLRRDVRADYAACVFDAPGKTFRDDLYPGYKANRSAMPDDLRAQIEPIHE
VVRLLGWKVLNVPGVEADDVIGTLSCMATERGIHTVISSGDKDLSQLVNDHVKVIDTMND
KVRDVAGVEAEFGVPPRLMVDYQVLVGDSVDNVPGVDKVGPKTAVKLLQEYGSLDALVER
AAEVKGAVGENLRKALPWLPTGRELLTIRKSCDLRDHIPGLPELEDIVIGGQDTEKLKAF
YERYGFKGLARQLEEHAVPPELIEEHRSKKKVGPGPGPGGLLQEPDLTGLSQVTNLQYDT
LLDWEQFEAWLAKIEAADLVAVDTETSSLDEMRAEIIGLSFSTEPGVAAYVPLAHSYADA
PPQLPREEVLARLKPWLEDPGRKKLGQHVKYDRHVFANHGIEVRGYAHDTMLQSYVLEVH
KPHGLASLAERHLGRSGIDYETIAGKGAHQIPFSQVAIDKAAEYSCEDSDQTLDVHLALW
PRLEQDGKLRFIYELEMQSSETLFRIERNGVLIDAATLARQSAELGQRILQLERECHELA
GQPFNLGSPKQIGEIFFGKLGLPVVKKTPSGAPSTDEEVLEKLAEDFPLPAKVLEHRSLS
KLKGTYTDKLAQMAHPRTGRVHTHYAQAVAVTGRLSSNEPNLQNIPVKTAEGRRVREAFV
APPGHLIASADYSQIELRIMAHLSEDPALLRAFTEGLDVHRATAAEVFGVPPDQVTSEQR
RYAKVINFGLIYGMSSFGLARNLAIDNQAAKNYIERYFQRYPGVKNYMDETRLAAKSKGY
VETVFGRRLYLPEINSPNGPRRGGAERAAINAPMQGTAADLIKLSMVKVQEVLDAQRRRT
KMIMQVHDELVFEVPEDEVEWVRGEIPRLMAGVAELRVPLLAEIGLGENWEKAH
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcccctgagcgagtccccggacgaagaacaagccccggcggcgcaggcgccg
gaaggcgccggccccaaggtgctgctgctggtcgacggctccagctacctgtaccgcgcc
ttccacgccatgcccgacctgcgggccgtgccgggcgacccgggcagcccggccaccggc
gccatccgcggcatgatcaacatgatgcagaagctgcggcgcgacgtgcgcgccgactac
gcggcctgcgtgttcgacgcgccgggcaagaccttccgcgacgacctgtaccccggctac
aaggccaaccgctcggccatgccggacgacctgcgcgcgcagatcgagcccatccacgag
gtggtgcgcctgctggggtggaaggtgctgaacgtgccgggcgtggaggccgacgacgtg
atcggcacgctgtcgtgcatggccaccgagcgcggcatccacaccgtgatctcctcgggc
gacaaggacctgagccagctggtcaacgaccacgtcaaggtcatcgacaccatgaacgac
aaggtgcgcgacgtggccggcgtggaggcggagttcggcgtgccgccgcggctgatggtg
gactaccaggtgctggtgggcgactcggtggacaacgtgccgggcgtggacaaggtcggg
cccaagacggcggtcaagctgctgcaggagtacggctcgctggacgccctggtcgagcgc
gcggccgaggtcaagggcgcggtcggcgagaacctgcgcaaggccctgccttggctgccc
accggccgcgagctgctgaccatccgcaagagctgcgacctgagggaccacatccccggc
ctgcccgagctggaggacatcgtcatcggcggccaggacacggaaaagctcaaggccttc
tacgagcgctacggcttcaaggggctggcgcggcagctggaggagcatgccgtgccgccc
gagctgatcgaggagcaccgcagcaagaagaaggtcggccccgggccggggccgggcggg
ctgttgcaggagcccgacctgacgggcctgtcgcaggtgaccaacctgcagtacgacacc
ctgctggactgggagcagttcgaggcctggctggcgaagatcgaggcggcggacctggtg
gccgtggacaccgagaccagttcgctggacgagatgcgggccgagatcatcggcctgtcg
ttcagcaccgagccgggcgtggccgcctacgtcccgctggcccacagctatgccgacgcg
ccgccgcagctgccgcgcgaggaggtgctggcgcgcctgaagccctggctggaggacccg
ggcaggaagaagctgggccagcacgtcaagtacgaccgccacgtcttcgccaaccacggt
atcgaggtgcgcggctacgcgcacgacaccatgctgcaaagctacgtgctggaggtgcac
aagccacacgggctggccagcctggccgagcgccacctggggcgcagcggcatcgactac
gagaccatcgccggcaagggcgcgcaccagatcccgttcagccaggtggccatcgacaag
gcggccgagtactcctgcgaggactcggaccagacgctggacgtgcacctggcgctgtgg
ccgcggctggagcaggacggcaagctgcgcttcatctacgagctggagatgcagtccagc
gagacgctgttccgcatcgagcgcaacggcgtgctgatcgacgccgccaccctggcccgg
cagagcgccgagctgggccagcgcatcctgcagctcgagcgcgagtgccacgagctggcc
ggccagccgttcaacctgggcagccccaagcagatcggcgagatcttcttcggcaagctg
ggcctgccggtggtgaagaagacgccctccggcgcgcccagcaccgacgaggaggtgctg
gagaagctggccgaggacttcccgctgccggccaaggtgctggagcaccgcagcctgtcc
aagctcaagggcacctacaccgacaagctggcgcagatggcgcatccgcgcaccggccgc
gtgcacacgcattacgcccaggccgtcgcggtcaccggccggctgtccagcaacgagccc
aacctgcagaacataccggtcaagacggccgagggccggcgcgtgcgcgaggccttcgtc
gcgccgcccggccacctgatcgccagcgccgactacagccagatcgagctgcgcatcatg
gcccacctgagcgaggacccggcgctgctgcgcgccttcaccgagggcctggacgtgcac
cgcgccaccgcggccgaggtgttcggcgtgccgcccgaccaggtcaccagcgagcagcgc
cgctacgccaaggtgatcaacttcggcctgatctacggcatgagcagcttcggcctggcg
cgcaacctggccatcgacaaccaggccgccaagaactacatcgagcgctacttccagcgc
tatcccggcgtcaagaactacatggacgagacgcgcctggcggccaagagcaagggctac
gtggagacggtgttcgggcggcgcctgtacctgccggagatcaactcacccaacggcccg
cgccgcggaggcgccgaacgcgcggccatcaacgcgcccatgcagggcacggccgccgac
ctgatcaagctgtccatggtgaaggtgcaggaggtgctggacgcgcagcggcgccgcacc
aagatgatcatgcaggtgcacgacgaactggtgttcgaggtgcccgaggacgaggtcgag
tgggtgcgcggcgagatcccgcgtttgatggccggcgtggcggagctgcgcgtgccgctg
ctggcggagatcgggttgggggagaactgggagaaggcgcactga
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