Ramlibacter tataouinensis: Rta_15130
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Entry
Rta_15130 CDS
T01544
Symbol
dnaE1
Name
(GenBank) Candidate DNA polymerase III alpha subunit, DnaE subfamily
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03030
DNA replication
rta03430
Mismatch repair
rta03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rta_15130 (dnaE1)
03430 Mismatch repair
Rta_15130 (dnaE1)
03440 Homologous recombination
Rta_15130 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rta03032
]
Rta_15130 (dnaE1)
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_15130 (dnaE1)
Enzymes [BR:
rta01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rta_15130 (dnaE1)
DNA replication proteins [BR:
rta03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Rta_15130 (dnaE1)
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Rta_15130 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
HHH_3
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AEG92604
UniProt:
F5Y4U8
LinkDB
All DBs
Position
1583514..1587038
Genome browser
AA seq
1174 aa
AA seq
DB search
MAPQGAGRPAAPRAARKIDPMFVHLRLHSEFSVVDGTCRIDDTVQAAAADGQPALAISDL
NNLFGAIKFYKAARGAGVKPVAGAEVVLQGLGTEPTALSRIVLLVQNRQGYLNLCELLAR
AWTQNVVKAQAVCKLDWLKELGEGLIALSGAQAGAVGQALVQGDTARASQCALALASVFP
HRFYLELQRAGRPDDEAHVAAAVQLAAHLQLPVVATHPVQFLAEDDYEAHEARVCIAEGE
ILGNQRRVRKFTREQYFKPAAQMVQLFADVPSAIANTLEIARRCSLVLELGKPRLPHFPT
PNGMPIEEYFRFASHEGLKERMLQLYPDAARREQEMPRYVERLEFEISTILKMGFPGYFL
IVGDFINWAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPDRVSMPDF
DIDFCQSNRDRVIEYVKQKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKL
IPNKPGQHITIDGALKVEPLLAERLEKEDEVKTLLGLAQKLEGLTRNVGMHAGGVLIAPG
KLTDFTPLYQQPGSDAAVSQYDKDDVEAAGLVKFDFLGLATLTILEIAKEFIRARHKGRE
DFSFENVPLQDAATYKLFADGKTEAVFQFESRGMQGMLRDARPTRLEDLIALNALYRPGP
MDLIPSFVARKHGREQVEYPHPLVAEMLSETYGIMVYQEQVMQTAQILGGYTLGGADLLR
RAMGKKKAEEMAQHREIFRAGAAKNGIGQEKADEIFDLMEKFAGYGFNKSHAAAYSLLAY
HTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAVKNFGLSFEPPDVNRGVYRFEPVSD
KVIRYGLGAVKGTGQAAIEAIVRAREEEGPFKSLYDFCCRVDRTRINKRTVEALVKAGAF
DSLQLNRAALVASIDRAFEFASVCEANANQGGLFDMGDAHGASTQEPELVEAMPWGVKER
LTFEKTAVGFYLSGHLFDEVAAEVRRFAKLRIDDLIDSREPQLVAGIVSDFRVINGQRGK
LALFKLDDKSATIEATADEAVINAHRHLLKDDELVIVMAKAQPDRFSGGVRLNVQQVWDL
ATARCRFGKYLKVAVNGKAPDIQRLVRDFPPRREMSEQGELVRGLPVRLALRRAQASAEL
QLGEEARFFPSDAALASWMAQADAGLAQIVYESS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
gtggcgccgcagggcgcaggccgtccggctgcgccgcgtgcggctcgtaaaatcgacccg
atgttcgtccacctgcgcctgcactccgaattctccgtggtcgacggcacctgccgcatc
gacgataccgtccaggccgccgcggctgacggccagcccgccctggcgatctccgacctg
aacaacctgttcggcgccatcaagttctacaaggcggcgcgtggcgccggcgtcaagccg
gtagcgggcgccgaggtcgtgctgcagggcctgggcacggagccgacggcgctgtctcgc
atcgttctgctggtgcagaaccgccagggctacctcaacctgtgcgagctgctggcgcgc
gcctggacacagaacgtggtcaaggcccaggcggtgtgcaagctcgactggctcaaggag
ctcggcgaggggctgatcgccctgtctggcgcccaggcgggcgcggtggggcaggcgctg
gtgcagggcgacacggcgcgcgccagccagtgcgcactggcgctggcctcggtcttcccg
caccgcttctacctggagctgcagcgggccggccggcccgacgacgaggcgcacgtggcg
gccgccgtgcagctggcggcccacctgcagctgcccgtggtggccacgcacccggtgcag
ttcctggccgaggacgactacgaggcgcacgaggcgcgggtgtgcatcgccgaaggcgag
atcctgggcaaccagcggcgcgtgcgcaagttcacgcgcgagcagtatttcaagccggcc
gcccagatggtgcagctgttcgcggacgtcccctcggcgatcgccaacacgctggagatc
gccaggcgctgcagcctagtgctggagctgggcaagccccgcctgccgcacttcccgacc
cccaacggaatgccgattgaggagtacttccgcttcgcctcgcacgaggggctgaaggag
cgcatgctgcagctgtatcccgacgcggcccggcgcgagcaggagatgccgcgctacgtg
gagcggctggagttcgagatcagcaccatcctcaagatggggttcccgggctacttcctg
atcgtgggcgacttcatcaactgggccaagaacaacggctgcccggtggggccgggccgc
ggctcgggcgccggctcgctggtggcctacgcgctcaagatcaccgacctggacccgctg
cagtacaacctgctgttcgagcgcttcctcaatcccgaccgggtgtccatgcccgacttc
gacatcgacttctgccagagcaaccgcgaccgcgtcatcgagtacgtcaagcagaagtac
ggccgcgacgccgtgagccagatcgccaccttcggcaccatggccgcccgcgccgccatc
cgcgacgtgggccgggtgctggacatgagctacaccttctgcgacggcatcagcaagctg
atccccaacaagccggggcagcacatcaccatcgacggtgcgctcaaggtggagccgctg
ctggccgagcgcctggagaaggaggacgaggtcaagaccctgctgggcctggcgcagaag
ctcgagggcctgacgcgcaacgtgggcatgcacgccggcggcgtgctgatcgccccgggc
aagctgaccgacttcacgccgctgtaccagcagccgggcagcgacgcggcggtgagccag
tacgacaaggacgacgtggaggccgccggcctggtgaagttcgacttcctgggcctggcc
acgctcaccatcctggagatcgccaaggagttcatccgcgcccggcacaaggggcgggag
gacttcagcttcgagaacgtgccgctgcaggatgcggccacctacaagctgttcgccgac
ggcaagaccgaggcggtgttccagttcgaaagccggggcatgcagggcatgctgcgcgac
gcgcgcccgacgcggctggaggacctgatcgcgctgaacgccctgtaccgccctggcccg
atggacctgatcccgagcttcgttgcacgcaagcacgggagagaacaggtcgagtacccg
cacccgctggtggccgagatgctttccgagacctacggcatcatggtctaccaggagcag
gtgatgcagaccgcgcagatcctgggcggctacacgctgggcggcgccgacctgctgcgc
cgggccatgggcaagaagaaggccgaggagatggcccagcaccgcgagatcttccgcgcc
ggtgcggccaagaacggcataggccaggagaaggccgacgagatcttcgacctgatggag
aagttcgccggctacggcttcaacaagtcgcacgccgccgcctactcgctgctggcctac
cacacgggctggctgaaggtgcactacacggccgagttcttctgcgccaacatgaccgtg
gagatggacgacaccgacaagctcaaggtgctgttcgaggacgcggtcaagaacttcggc
ctgtccttcgagccgcccgacgtcaaccgcggcgtctaccgcttcgagccggtgtcggac
aaggtgatccgctacggcctgggcgcggtgaagggcaccggccaggccgccatcgaggcc
atcgtccgcgcgcgcgaggaggagggtccgttcaagagcctgtacgacttctgctgccgc
gtcgaccgcacgcgcatcaacaagcgcaccgtggaggccctggtcaaggccggcgccttc
gattcgctgcagctcaaccgcgcggcgctggtcgcctccatcgaccgcgccttcgagttc
gcgtccgtctgcgaggccaacgccaaccagggcggcctgttcgacatgggcgacgcgcac
ggcgccagcacgcaggagcccgagctggtggaagccatgccctggggcgtgaaggagcgc
ctcacgttcgagaagacggcggtgggcttctacctgtcgggccacctgttcgacgaggtg
gcggccgaggtgcggcgcttcgccaagctgcgaatcgacgacctgatcgactcgcgcgag
ccgcagctggtggcgggcatcgtcagtgacttccgcgtcatcaacggccagcgcggcaag
ctggcgctgttcaagctggacgacaagtccgccaccatcgaggccacggccgacgaagcc
gtgatcaacgcccaccgccatctgctcaaggacgacgagctggtgatcgtcatggccaag
gcccagcccgaccgcttctccggcggcgtgcggctgaacgtgcagcaggtgtgggacctg
gccaccgcgcgctgccgcttcggcaagtacctcaaggtggcggtcaacggcaaggcgccc
gacatccagcgcctggtgcgcgatttcccgcccaggcgcgagatgagcgagcagggcgag
ctggtgcgcggcctgccggtgcgcctggcgctgcgccgggcccaggccagcgccgagctg
cagctgggcgaggaggcgcgcttcttccccagcgacgccgccctggccagctggatggcc
caggccgacgccggcctggcgcagatcgtctacgaatcgagctga
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