Ramlibacter tataouinensis: Rta_16100
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Entry
Rta_16100 CDS
T01544
Symbol
topB
Name
(GenBank) Candidate type IB DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rta
Ramlibacter tataouinensis
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rta03032
]
Rta_16100 (topB)
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_16100 (topB)
Enzymes [BR:
rta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Rta_16100 (topB)
DNA replication proteins [BR:
rta03032
]
Prokaryotic type
DNA Topoisomerases
Rta_16100 (topB)
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Rta_16100 (topB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AEG92702
UniProt:
F5Y5K6
LinkDB
All DBs
Position
complement(1694017..1695195)
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AA seq
392 aa
AA seq
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MERTDPERSDRIDTAVQAAEEAGLVYVSPDRPGIRRERQGEGFAYFKPDGARVQDEATLE
RIRKLVIPPAWTDVWICSRPSGHLQATGRDAKGRKQYRYHPAFREARESTKYEHMLEFAR
ALPALRAKVAQHMALRGLPREKVLATVVHLLESTLIRVGNDDYARDNQSYGLTTLRNSHV
KVEGSQLRFQFKGKSGKTWQLRVGDRRVARVVRACQELPGQELFQYIDEDGELRDVTSAD
VNEYLREISGSDITAKDFRTWAGTVMAALALQEFERFDTQAAAKKNLKAAIEKVSARLGN
TPAICRKCYVHPEILTAYATGDLLLEIKDEVEAQLREDLGHLKPEEAAVLSLLEARLNRT
LEGTLQDSLVALDKGARPAGAKPRKRSPARQS
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggaacggaccgacccggagcgcagcgacaggatcgacacggccgtgcaggctgccgag
gaggccggcctggtctacgtctcgcccgaccgtccgggcatccgccgggagcgccagggc
gaaggcttcgcctacttcaagcccgacggtgcgcgcgtgcaggacgaggcgacgctggag
cgcatccgcaaactggtcatcccgccggcgtggacggatgtgtggatctgcagccgaccc
agcggccacctgcaggccaccgggcgcgacgccaagggccgcaagcagtaccgctaccac
ccggccttccgggaggcgcgcgagagcaccaagtacgagcacatgctggagttcgcccgc
gccctgccggcgctgcgcgccaaggtggcgcagcacatggcgctgcgcggcctgccgcgc
gagaaggtgctggccacggtggtgcacctgctggagagcacgctcatccgcgtgggcaac
gacgactacgcacgcgacaaccagagctacggcctgaccacgctgcgcaactcgcacgtg
aaggtcgagggctcgcagctgcgcttccagttcaagggcaagagcggcaagacctggcag
ctgcgcgtcggcgaccggcgcgtggcccgggtggtgcgggcctgccaggagctgcccggc
caggagctgttccagtacatcgacgaggacggcgagctgcgcgacgtcacctcggccgat
gtcaacgagtacctgcgcgagatcagcggcagcgacatcacggccaaggatttccgcacc
tgggccggcaccgtgatggccgcgctggcgctgcaggagttcgagcgcttcgacacccag
gcggccgccaagaagaacctgaaggccgccatcgagaaggtttcggcgcggctgggcaac
acgccggccatctgccgcaagtgctatgtccatccggagatcctcacggcctacgccacg
ggcgacctgctgctggagatcaaggacgaggtcgaggcgcagctgcgcgaggacctgggc
catctcaagcccgaggaagcggcggtgctcagcctgctggaggcgcgcctgaaccggacg
ctggagggaacgctgcaggacagcctggtggcgctggacaagggcgcgcggcctgccggc
gccaagccccgcaagcgaagcccggccaggcagagctga
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